View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20161_low_4 (Length: 255)
Name: NF20161_low_4
Description: NF20161
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20161_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 18 - 241
Target Start/End: Original strand, 3878618 - 3878841
Alignment:
| Q |
18 |
ttatattgatgtagtaaatctccttggaaattgattttatacaggcagggaatttatgggttcaatgcttgattcttcagatggagtactactgcatgaa |
117 |
Q |
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| T |
3878618 |
ttatattgatgtagtaaatctccttggaaattgattttatacaggcagggaatttatgggttcaatgcttgattcttcagatggagtactactgcatgaa |
3878717 |
T |
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| Q |
118 |
tggtggtctacgttctatccggtatttgattctagacgaaggaggcatcaagagtctaaccgagatccctctaataaggtggtatcgaaatgataattga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3878718 |
tggtggtctacgttctatccggtatttgattctagacgaaggaggcatcaagagtctaaccgagagccctctaataaggtggtatcgaaatgataattga |
3878817 |
T |
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| Q |
218 |
taaatcttattttctgtttacccc |
241 |
Q |
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|||||||||||||||||||||||| |
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| T |
3878818 |
taaatcttattttctgtttacccc |
3878841 |
T |
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