View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_high_15 (Length: 322)
Name: NF20162_high_15
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 16 - 313
Target Start/End: Original strand, 36286513 - 36286810
Alignment:
| Q |
16 |
tttggttctgtctacaaggtattagaatgaaagcactaccttcttccaagcataaaaaattctgtttatctccagcgtgtacagttctgttgaattacag |
115 |
Q |
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| T |
36286513 |
tttggttctgtctacaaggtattagaatgaaagcactaccttcttccaagcataaaaaattctgtttatctccagcgtgtagagttctgttgaattacag |
36286612 |
T |
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| Q |
116 |
ggtcaactatatgatggtacatgggtagcagtcaaacaactctcctcgaagtcccggcagggaaaccgtgaatttttaaatgagataggcatgatatctt |
215 |
Q |
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| T |
36286613 |
ggtcaactatatgatggtacatgggtagcagtcaaacaactctcctcgaagtcccggcagggaaaccgtgaatttttaaacgagataggcatgatatctt |
36286712 |
T |
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| Q |
216 |
gtttacaacatcctaatcttgtgaaacttcatggatgctgcattgaaggggatcaattaatattggtgtatgagtacatggaaaataatagcctggcc |
313 |
Q |
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| T |
36286713 |
gtttacaacatcctaatcttgtgaaacttcatggatgctgcattgaaggggatcaattaatattggtgtatgagtacatggaaaataatagcctggcc |
36286810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 31303235 - 31303174
Alignment:
| Q |
182 |
cgtgaatttttaaatgagataggcatgatatcttgtttacaacatcctaatcttgtgaaact |
243 |
Q |
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| T |
31303235 |
cgtgagtttttaaatgagataggcatgatttctgctttgcaacatccttatcttgttaaact |
31303174 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 31372084 - 31371982
Alignment:
| Q |
141 |
tagcagtcaaacaactctcctcgaagtcccggcagggaaaccgtgaatttttaaatgagataggcatgatatcttgtttacaacatcctaatcttgtgaa |
240 |
Q |
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| T |
31372084 |
tagcagtcaaacaactctcttctaattcaaggcaagggaatcgcgagtttttaaacgagataggaatgatttctgctttgcaacatccttatcttgttaa |
31371985 |
T |
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| Q |
241 |
act |
243 |
Q |
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| T |
31371984 |
act |
31371982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 31279260 - 31279199
Alignment:
| Q |
182 |
cgtgaatttttaaatgagataggcatgatatcttgtttacaacatcctaatcttgtgaaact |
243 |
Q |
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| T |
31279260 |
cgtgaatttttaaacgagataggaatgatttctgctttgcaacatccttatcttgttaaact |
31279199 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 243
Target Start/End: Complemental strand, 31289420 - 31289359
Alignment:
| Q |
182 |
cgtgaatttttaaatgagataggcatgatatcttgtttacaacatcctaatcttgtgaaact |
243 |
Q |
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| T |
31289420 |
cgtgagtttttaaatgagataggaatgatttctgctttgcaacatccttatcttgttaaact |
31289359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 200 - 264
Target Start/End: Original strand, 31462717 - 31462781
Alignment:
| Q |
200 |
ataggcatgatatcttgtttacaacatcctaatcttgtgaaacttcatggatgctgcattgaagg |
264 |
Q |
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| T |
31462717 |
ataggcatgatatctgctttgcagcatccaaatcttgtgaagctttacggatgttgcattgaagg |
31462781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 176 - 252
Target Start/End: Complemental strand, 40126430 - 40126354
Alignment:
| Q |
176 |
ggaaaccgtgaatttttaaatgagataggcatgatatcttgtttacaacatcctaatcttgtgaaacttcatggatg |
252 |
Q |
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| T |
40126430 |
ggaaaccgtgagtttgtgaatgagataggaatgatatctggacttcaacatccaaatcttgttaagctccatggatg |
40126354 |
T |
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