View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_high_22 (Length: 265)
Name: NF20162_high_22
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_high_22 |
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Alignment Details
Target: chr1 (Bit Score: 228; Significance: 1e-126; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 17 - 248
Target Start/End: Original strand, 26785839 - 26786070
Alignment:
| Q |
17 |
aaaagagaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggt |
116 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785839 |
aaaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggt |
26785938 |
T |
|
| Q |
117 |
tgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26785939 |
tgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgt |
26786038 |
T |
|
| Q |
217 |
ccctaacttcatactttatgttcacacctttg |
248 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
26786039 |
ccctaacttcatactttatgttcacacctttg |
26786070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 248
Target Start/End: Original strand, 26822481 - 26822711
Alignment:
| Q |
18 |
aaagagaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggtt |
117 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || ||| ||| ||| || ||||||||||||| |
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| T |
26822481 |
aaagagtaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaagaaaagggatcgttcggcggagaaagtcaggttcaggtt |
26822580 |
T |
|
| Q |
118 |
gaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtc |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26822581 |
gaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtc |
26822680 |
T |
|
| Q |
218 |
cctaacttcatactttatgttcacacctttg |
248 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
26822681 |
cctaacttcatactttatgttcacacctttg |
26822711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 28 - 248
Target Start/End: Original strand, 26791590 - 26791810
Alignment:
| Q |
28 |
taccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaatcagc |
127 |
Q |
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||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| |||||| || ||| |||||||||||||||||||||||||| |
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| T |
26791590 |
taccaaacttccagcgagcttgaacgagaccaatctcaggattattgacaagaaaagggatggttcggaggagaaaatcaggttcaggttgaaaatcagc |
26791689 |
T |
|
| Q |
128 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
227 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26791690 |
atcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaacttca |
26791789 |
T |
|
| Q |
228 |
tactttatgttcacacctttg |
248 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
26791790 |
tactttatgttcacacctttg |
26791810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 23 - 255
Target Start/End: Original strand, 26832563 - 26832795
Alignment:
| Q |
23 |
gaaattaccaaacttccagcgagcctgaacgagaccaatttcaggattattgacaaggaaaggaatggtttggcagaggaaatcaggttcaggttgaaaa |
122 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||||| |||||| | || || ||||||||||| ||||||||| |
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| T |
26832563 |
gaaattaccaaacttccagcgagcctgaacaagaccaatatcaggattattaacaaggaaagggatggttcgccaaagaaaatcaggttctggttgaaaa |
26832662 |
T |
|
| Q |
123 |
tcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttctgttgtccctaa |
222 |
Q |
| |
|
|||||||||||||| |||||||| ||||||||| |||| |||||||||||||||||||||| ||||| |||||||| |||||||| |||||||||| |
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| T |
26832663 |
tcagcatcaaagatagcaacataatcacattgtttcacatagctatgtttcattccctcctttaatgcacctgctttgtaaccatttctattgtccctaa |
26832762 |
T |
|
| Q |
223 |
cttcatactttatgttcacacctttgcttctcc |
255 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
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| T |
26832763 |
cttcatactttatattcacacctttgcttctcc |
26832795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 111 - 255
Target Start/End: Complemental strand, 41546355 - 41546211
Alignment:
| Q |
111 |
tcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgtacccatttc |
210 |
Q |
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|
||||||||||||||||||||||||||||||||||| ||||| || ||||| ||||| |||||||| || || ||||||||||||||||| ||||||| |
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| T |
41546355 |
tcaggttgaaaatcagcatcaaagatggcaacatagtcacaaagtttgacatagctatgcttcattccttctttaagagcaccagctttgtaaccatttc |
41546256 |
T |
|
| Q |
211 |
tgttgtccctaacttcatactttatgttcacacctttgcttctcc |
255 |
Q |
| |
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| || ||||| | |||||||||||||| | ||||| ||||||| |
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| T |
41546255 |
tattttcccttatctcatactttatgtttatgccttttcttctcc |
41546211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 102 - 251
Target Start/End: Complemental strand, 41917588 - 41917439
Alignment:
| Q |
102 |
aaatcaggttcaggttgaaaatcagcatcaaagatggcaacatattcacattgtaggacatgactatgtttcattccctcctttagagcaccagctttgt |
201 |
Q |
| |
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|||||||| || |||||||||||||||||||| || ||||||| |||||||| |||| ||||| |||||||| || |||| ||| || ||||||| |
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| T |
41917588 |
aaatcaggctctggttgaaaatcagcatcaaatattgcaacatgatcacattgcttcacatagctatgcttcattccttcttttaaagcccctgctttgt |
41917489 |
T |
|
| Q |
202 |
acccatttctgttgtccctaacttcatactttatgttcacacctttgctt |
251 |
Q |
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| T |
41917488 |
atccatttctattgtccctaacttcatactttatattcactcctttgctt |
41917439 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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