View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_high_26 (Length: 233)
Name: NF20162_high_26
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_high_26 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 109; Significance: 6e-55; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 113 - 233
Target Start/End: Original strand, 4216686 - 4216806
Alignment:
| Q |
113 |
tgaagaatcaagatatgagtttttactctggcatgagcagtatcaattccagaagcatcaagagcatcgtgcaagaagaacttgaggtcagttgccatgt |
212 |
Q |
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| T |
4216686 |
tgaagaatcaagacatgagtttttactctggcatgagcagtatcaattccagaagcatcaagagcatcatgcaagaagaacttgaggtcagttgccacgt |
4216785 |
T |
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| Q |
213 |
gttgaacgttggagcctccat |
233 |
Q |
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| T |
4216786 |
gttgaacgttggagcctccat |
4216806 |
T |
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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 4216581 - 4216627
Alignment:
| Q |
8 |
atcacaggatgacaaattctacatgtttctaagcttcatttaacatg |
54 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4216581 |
atcacaggatgacaaattctacatgtttctaagcttcatttaacatg |
4216627 |
T |
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