View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_high_5 (Length: 448)
Name: NF20162_high_5
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 137; Significance: 2e-71; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 254 - 430
Target Start/End: Original strand, 924327 - 924503
Alignment:
| Q |
254 |
ctattttatttttattagcttttattgaattaatccataatcttatatttcatttccagtaatgtatttgttttagatattggcttttcacaagttccat |
353 |
Q |
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| T |
924327 |
ctattttattctaattagcttttattgaattaatccaaaatcttatatttaatttcctgtaatgtatttgttttagacattggcttttcacaagtttcat |
924426 |
T |
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| Q |
354 |
tagactgttgatcttttgttataaaagaataagccaataatctctttatgcatttctacactaatagtgtactcatt |
430 |
Q |
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| T |
924427 |
tagactgttcatcttttgttataaaagaataagccaatagtctctctatgcatttctacactaatagtgtactcatt |
924503 |
T |
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Target: chr7 (Bit Score: 119; Significance: 1e-60; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 98 - 305
Target Start/End: Complemental strand, 39704984 - 39704782
Alignment:
| Q |
98 |
tgtctttcccctgcttttcttcttattcttggaatgatagtaagcattgcatccgatattattttctcttcgatttaaatttgtacattggcatgatata |
197 |
Q |
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| T |
39704984 |
tgtctttcccctctatttcttcttattcttggaatgatagtaaacattgct----atattattttgtctttgatttaaatttgtacattggcatgatata |
39704889 |
T |
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| Q |
198 |
ttgacgatagaagaaatatgatatatggaaatgtttaatgggagttttgcgtttaactattttatttttattagcttttattgaattaatccataatctt |
297 |
Q |
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| T |
39704888 |
ccgaagatagacgaatgatgatatatggaaatgtttaatggaagttttgcgtttaactattttattctaattagctttt-ttgaattaatccataatctt |
39704790 |
T |
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| Q |
298 |
atatttca |
305 |
Q |
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| T |
39704789 |
atatttca |
39704782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 339 - 430
Target Start/End: Complemental strand, 39704786 - 39704695
Alignment:
| Q |
339 |
tttcacaagttccattagactgttgatcttttgttataaaagaataagccaataatctctttatgcatttctacactaatagtgtactcatt |
430 |
Q |
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||||||| |||||| || | |||||||||||||||||||||||||||| ||||| ||||| |||| |||| |||| |||||||||||||||| |
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| T |
39704786 |
tttcacaggttccactaaagtgttgatcttttgttataaaagaataagtcaatagtctctatatggatttatacaataatagtgtactcatt |
39704695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 3e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 120 - 197
Target Start/End: Complemental strand, 46832809 - 46832732
Alignment:
| Q |
120 |
ttattcttggaatgatagtaagcattgcatccgatattattttctcttcgatttaaatttgtacattggcatgatata |
197 |
Q |
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|||||| ||||| |||||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
46832809 |
ttattcctggaacgatagtaaacattgcatcctatattattttctctttgatttaaatttgtacattggcatgatata |
46832732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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