View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20162_high_9 (Length: 399)

Name: NF20162_high_9
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20162_high_9
NF20162_high_9
[»] chr1 (4 HSPs)
chr1 (13-195)||(6418440-6418622)
chr1 (291-384)||(6418264-6418357)
chr1 (25-111)||(33826163-33826249)
chr1 (19-95)||(14083210-14083286)
[»] chr3 (4 HSPs)
chr3 (25-111)||(37671593-37671679)
chr3 (34-109)||(51842290-51842364)
chr3 (25-111)||(25587968-25588055)
chr3 (25-109)||(46006628-46006711)
[»] chr5 (3 HSPs)
chr5 (26-110)||(19149232-19149316)
chr5 (25-78)||(2784876-2784928)
chr5 (25-109)||(8646958-8647042)
[»] chr4 (4 HSPs)
chr4 (80-129)||(53092846-53092895)
chr4 (35-109)||(13030609-13030683)
chr4 (32-111)||(29146027-29146106)
chr4 (25-116)||(36703612-36703703)
[»] chr8 (2 HSPs)
chr8 (25-96)||(2433717-2433788)
chr8 (34-111)||(19164606-19164682)
[»] chr2 (2 HSPs)
chr2 (25-109)||(8811262-8811346)
chr2 (32-116)||(16403274-16403358)
[»] chr7 (1 HSPs)
chr7 (25-108)||(18803581-18803664)


Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 13 - 195
Target Start/End: Complemental strand, 6418622 - 6418440
Alignment:
Q  13 aatatgtagaacttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaacttcatatttaattcatcatttgttgaaaaatta 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||| ||||||||||||||||||||||||||||||||     
T  6418622 aatatgtagaacttttttgacaaaacatcaattaaatattaacttttaagtgtccaaaaacataaaattcatatttaattcatcatttgttgaaaaattc 6418523  T
Q  113 taaactttcagaagagaaaattttagaacataccaaacatgactgcataaaaagaaaaattgaatgatacaaatgatttgact 195  Q
    ||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  6418522 taaactttcagaagagaaaattttataacataccaaacatgactgtataaaaagaaaaattgaatgatacaaatgatttgact 6418440  T

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Target: chr1; HSP #2
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 291 - 384
Target Start/End: Complemental strand, 6418357 - 6418264
Alignment:
Q  291 ataccaacaaccttttttgaagtacatgagagcaaacctaattttattcatgaacttatggagataatacttcatgatgtgtgaaatgaaagta 384  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  6418357 ataccaacaaccttttttgaagtacatgagagcaaacctaattttattcatgaacttatggagataatatttcatgatgggtgaaatgaaagta 6418264  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 33826249 - 33826163
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaatt 111  Q
    |||||| ||||||||| |||||||||| || |||||| |  ||||||| |||||  ||||||||||||||||  ||||||||||||||    
T  33826249 ttttttaacaaaacataaattaaatatgaaattttaaccg-ccaaaaatataaaaattcatatttaattcatgttttgttgaaaaatt 33826163  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 19 - 95
Target Start/End: Original strand, 14083210 - 14083286
Alignment:
Q  19 tagaacttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaacttcatatttaattcat 95  Q
    ||||| |||||| ||||||||| |||||||||| || ||||   | |||||| | ||||| ||||||||||||||||    
T  14083210 tagaatttttttaacaaaacatgaattaaatatgaatttttttacctccaaacatataaaattcatatttaattcat 14083286  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 37671679 - 37671593
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaatt 111  Q
    |||||| |||||| || |||||||||| || |||||||| ||||||||||||||  ||||||||||||||||  |||||| |||||||    
T  37671679 ttttttaacaaaatataaattaaatatgaatttttaagc-tccaaaaacataaaaattcatatttaattcatgttttgttaaaaaatt 37671593  T

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Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 34 - 109
Target Start/End: Original strand, 51842290 - 51842364
Alignment:
Q  34 aaaacatcaattaaatattaacttttaagcatccaaaaacataaacttcatatttaattcatcatttgttgaaaaa 109  Q
    ||||||| ||||||| || || ||||||||| ||||||||||||| ||||||||||||||||  |||||| |||||    
T  51842290 aaaacattaattaaagatgaatttttaagca-ccaaaaacataaaattcatatttaattcatgttttgttaaaaaa 51842364  T

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Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 111
Target Start/End: Complemental strand, 25588055 - 25587968
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac--ttcatatttaattcatcatttgttgaaaaatt 111  Q
    |||||| ||||||||| |||||||||| || ||||||||| ||||| |||||||   ||||||||||||||||  |||||| |||||||    
T  25588055 ttttttaacaaaacatgaattaaatatgaatttttaagca-ccaaacacataaaaaattcatatttaattcatattttgttaaaaaatt 25587968  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 46006711 - 46006628
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaacttcatatttaattcatcatttgttgaaaaa 109  Q
    |||||| ||||||||| |||||||||| || |||||| |||  ||||| ||||| ||||||||||||| ||  |||||| |||||    
T  46006711 ttttttaacaaaacataaattaaatatgaatttttaaccata-aaaaatataaaattcatatttaatttatgttttgttaaaaaa 46006628  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 26 - 110
Target Start/End: Original strand, 19149232 - 19149316
Alignment:
Q  26 tttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaat 110  Q
    ||||| ||||||||| |||||||||| || ||||||||||  |||||||||||  |||||||||||| |||| |||||| ||||||    
T  19149232 tttttaacaaaacattaattaaatatgaatttttaagcata-aaaaacataaaagttcatatttaatccatcttttgttaaaaaat 19149316  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 78
Target Start/End: Complemental strand, 2784928 - 2784876
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaa 78  Q
    |||||| ||||||||| || ||||||| |||||||||||| |||||||||||||    
T  2784928 ttttttaacaaaacataaactaaatatgaacttttaagca-ccaaaaacataaa 2784876  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Complemental strand, 8647042 - 8646958
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacat-aaacttcatatttaattcatcatttgttgaaaaa 109  Q
    |||||| ||||||||| ||||||||||||| |||||| ||| |||||| || ||| ||||| ||||||||||  |||||| |||||    
T  8647042 ttttttaacaaaacataaattaaatattaatttttaaccat-caaaaatataaaaattcatttttaattcatattttgttaaaaaa 8646958  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 80 - 129
Target Start/End: Complemental strand, 53092895 - 53092846
Alignment:
Q  80 ttcatatttaattcatcatttgttgaaaaattataaactttcagaagaga 129  Q
    |||||||||||||||||||||||| ||||||| |||||||| | ||||||    
T  53092895 ttcatatttaattcatcatttgttaaaaaattctaaacttttacaagaga 53092846  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 35 - 109
Target Start/End: Complemental strand, 13030683 - 13030609
Alignment:
Q  35 aaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaa 109  Q
    ||||||||| ||||||| || |||||||| ||||||||||||||  ||||||||||||||||  |||||| |||||    
T  13030683 aaacatcaactaaatataaatttttaagc-tccaaaaacataaaaattcatatttaattcatgttttgttaaaaaa 13030609  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 111
Target Start/End: Complemental strand, 29146106 - 29146027
Alignment:
Q  32 acaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaatt 111  Q
    ||||||||| |||||||||| || |||||| || ||||||| |||||  ||||||||||||||||  |||||| |||||||    
T  29146106 acaaaacatgaattaaatataaatttttaacca-ccaaaaatataaaaattcatatttaattcatgttttgttaaaaaatt 29146027  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 116
Target Start/End: Original strand, 36703612 - 36703703
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaattataaa 116  Q
    |||||| ||||||||| |||| ||||| || |||||| |||| ||||| |||||  |||||||| |||||||  |||||||||||||| ||||    
T  36703612 ttttttaacaaaacataaatttaatatgaatttttaaccatc-aaaaatataaaaattcatattaaattcatgttttgttgaaaaattctaaa 36703703  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 25 - 96
Target Start/End: Original strand, 2433717 - 2433788
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatc 96  Q
    |||||| ||||||||| |||||||||| || ||||||| | |||||||||||||  |||||||||||||||||    
T  2433717 ttttttaacaaaacatgaattaaatatgaatttttaagta-ccaaaaacataaaaattcatatttaattcatc 2433788  T

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Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 34 - 111
Target Start/End: Complemental strand, 19164682 - 19164606
Alignment:
Q  34 aaaacatcaattaaatattaacttttaagcatccaaaaacataaacttcatatttaattcatcatttgttgaaaaatt 111  Q
    ||||||| |||||||||| || ||||||||| |||||||   ||| ||||||||||||||||  |||||| |||||||    
T  19164682 aaaacattaattaaatatgaatttttaagca-ccaaaaattaaaaattcatatttaattcatgttttgtttaaaaatt 19164606  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 25 - 109
Target Start/End: Original strand, 8811262 - 8811346
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaa 109  Q
    |||||| ||||||||| |||||||||| || |||||| | |||||||| |||||  ||||||||||||||||  |||||| |||||    
T  8811262 ttttttaacaaaacataaattaaatatgaatttttaacc-tccaaaaatataaaaattcatatttaattcatgttttgttaaaaaa 8811346  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 16403274 - 16403358
Alignment:
Q  32 acaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaaattataaa 116  Q
    |||||| || |||||||||| || |||||||  ||||||||||||||  || ||||||||||||||| ||||| ||||| ||||||    
T  16403274 acaaaaaatgaattaaatatgaatttttaagt-tccaaaaacataaaagttaatatttaattcatcacttgttaaaaaaatataaa 16403358  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 25 - 108
Target Start/End: Complemental strand, 18803664 - 18803581
Alignment:
Q  25 ttttttgacaaaacatcaattaaatattaacttttaagcatccaaaaacataaac-ttcatatttaattcatcatttgttgaaaa 108  Q
    |||||| ||||||||| |||||||||| || |||||| | |||||||| |||||  ||||||||||||||||  |||||| ||||    
T  18803664 ttttttaacaaaacataaattaaatatgaatttttaa-cttccaaaaatataaaaattcatatttaattcatgttttgttaaaaa 18803581  T

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