View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20162_low_1 (Length: 572)
Name: NF20162_low_1
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_1 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 174; Significance: 2e-93; HSPs: 17)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 342 - 554
Target Start/End: Complemental strand, 14856325 - 14856112
Alignment:
| Q |
342 |
ttggacttcagagaggtttcaagcattgacgccacgcccttatggaaaagggcatcatggtgtaccaaagttggctagatggggtggaatagaaatgatg |
441 |
Q |
| |
|
|||| ||| |||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
14856325 |
ttgggctttagagaggtttcaagcattgacgccacacccttatggaaaagggcaccatgttgtaccaaaggtggctagatggggtggaatagaaatgatg |
14856226 |
T |
|
| Q |
442 |
aaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaagccatacgagaaatcaccatgcattgagg-tttataat |
540 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||| |
|
|
| T |
14856225 |
aaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtgaaagccatacgagaattcaccatgcattgaggttttataat |
14856126 |
T |
|
| Q |
541 |
gaaaaggatatgtg |
554 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
14856125 |
gaaaaggatatgtg |
14856112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 11 - 203
Target Start/End: Complemental strand, 14857038 - 14856837
Alignment:
| Q |
11 |
cagagacgacacttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc- |
109 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
14857038 |
cagagacgacacttattctcttacaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagtgaagtacaatgggtggagaactcca |
14856939 |
T |
|
| Q |
110 |
-------aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaagacttaatagcagttttaa-cccctaactt |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| ||| |||||||||| |
|
|
| T |
14856938 |
caagaagaatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaattggaaggtttaatagcagttataaccccctaactt |
14856839 |
T |
|
| Q |
202 |
tc |
203 |
Q |
| |
|
|| |
|
|
| T |
14856838 |
tc |
14856837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 342 - 554
Target Start/End: Complemental strand, 20020353 - 20020141
Alignment:
| Q |
342 |
ttggacttcagagaggtttcaagcattgacgccacgcccttatggaaaagggcatcatggtgtaccaaagttggctagatggggtggaatagaaatgatg |
441 |
Q |
| |
|
|||| ||| |||||||||||||||| ||| |||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
20020353 |
ttgggctttagagaggtttcaagcactgaagccacgcccttatggaaaagggtatcatggtttaccaaaggtggctagatggggtggaatagaaatgatg |
20020254 |
T |
|
| Q |
442 |
aaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaagccatacgagaaatcaccatgcattgaggtttataatg |
541 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||| ||| ||| |||| ||||| | ||||| ||||| |||||||| |||||||| ||||||| |
|
|
| T |
20020253 |
aaaactaaaatcttgaaaaaggtcatggattgtgcaggttttggagatggatttttgtggcaaccatatgagaattcaccatgtattgaggtctataatg |
20020154 |
T |
|
| Q |
542 |
aaaaggatatgtg |
554 |
Q |
| |
|
||||||||||||| |
|
|
| T |
20020153 |
aaaaggatatgtg |
20020141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 351 - 554
Target Start/End: Complemental strand, 19743709 - 19743511
Alignment:
| Q |
351 |
agagaggtttcaagcattgacgccacgcccttatggaaaagggcatcatggtgtaccaaagttggctagatggggtggaatagaaatgatgaaaactaaa |
450 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||| ||| |||||||| ||||||||||||| |||||||||||||||||||| |
|
|
| T |
19743709 |
agagaggtttcaagcattgaagccacgcccttatggcaaagggcatcacggtttaccaaaggtggctagatgggg-----tagaaatgatgaaaactaaa |
19743615 |
T |
|
| Q |
451 |
gtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaagccatacgagaaatcaccatgcattgaggtttataatgaaaaggata |
550 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||| |||| ||||| | ||||| ||||| |||||||| |||||||| |||||||||||||||| |
|
|
| T |
19743614 |
atcttgaaaaaggtcatggattgtgcaggttttggagatggatttttgtggcaaccatatgagaattcaccatgtattgaggtctataatgaaaaggata |
19743515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 22 - 172
Target Start/End: Original strand, 19967195 - 19967353
Alignment:
| Q |
22 |
cttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc--------aatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||||||||||||| || |||| |
|
|
| T |
19967195 |
cttattctcttccaccccatttctctatttcctttcaaaccaccacaaatttgccactagaagtgaagtacaatgggtggagaaggccgcaagatgaatg |
19967294 |
T |
|
| Q |
114 |
gaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
172 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19967295 |
gaagaaatgggtcaacaaattacgaccaaagtttgaatttttatggatcaaaactggaa |
19967353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 18 - 172
Target Start/End: Complemental strand, 20021087 - 20020925
Alignment:
| Q |
18 |
gacacttattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaactcc-------- |
109 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||||| |||| |
|
|
| T |
20021087 |
gacactgattctcttccaccccatttctctatttcctctcaaaccaccacaaatttgccattagaagttaagtattatgggtggagagctccacaagaag |
20020988 |
T |
|
| Q |
110 |
aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
172 |
Q |
| |
|
||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||||| |
|
|
| T |
20020987 |
aatggaagaaatgggtcaacaaattaagaccaaagtttgaatttctatggatcaaaactggaa |
20020925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 236 - 342
Target Start/End: Complemental strand, 20020589 - 20020483
Alignment:
| Q |
236 |
gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga |
335 |
Q |
| |
|
|||||||||||||||||||| || ||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| |||||||||||||||| ||| |
|
|
| T |
20020589 |
gtttattggttatcaaggtttgtatttccttcagattcttatgataccatttccaaagctgtttttcctattgcaatacgtttagctcatggaaataaga |
20020490 |
T |
|
| Q |
336 |
tagctct |
342 |
Q |
| |
|
||||||| |
|
|
| T |
20020489 |
tagctct |
20020483 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 397 - 554
Target Start/End: Original strand, 19967980 - 19968137
Alignment:
| Q |
397 |
catggtgtaccaaagttggctagatggggtggaatagaaatgatgaaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttc |
496 |
Q |
| |
|
|||||| |||||||| | ||||||||||||||| || |||| ||||| ||| ||||||||||| | ||||||||||||| ||| | |||| |||| |
|
|
| T |
19967980 |
catggtttaccaaaggtagctagatggggtggagtaaaaataccgaaaaataagaacttgaaaaaggacttggattgtgcaggttttgaaaatggatttt |
19968079 |
T |
|
| Q |
497 |
tgtggaagccatacgagaaatcaccatgcattgaggtttataatgaaaaggatatgtg |
554 |
Q |
| |
|
||||| | ||||| ||||| ||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19968080 |
tgtggcaaccatatgagaattcaccatgcattgaggtctataatgaaaaggatatgtg |
19968137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 415 - 545
Target Start/End: Complemental strand, 20027095 - 20026965
Alignment:
| Q |
415 |
gctagatggggtggaatagaaatgatgaaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaagccatacgaga |
514 |
Q |
| |
|
||||||||||||||| || | ||||||||| |||| ||||||| ||| | |||||||||||||||||| |||| |||| ||||||| || || |||| |
|
|
| T |
20027095 |
gctagatggggtggagtaaacgtgatgaaaaataaaaacttgaaagaggacttggattgtgcaggatttagaaatggatttttgtggaaaccttatgaga |
20026996 |
T |
|
| Q |
515 |
aatcaccatgcattgaggtttataatgaaaa |
545 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||| |
|
|
| T |
20026995 |
attcaccgtgcattgaggtctataatgaaaa |
20026965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 172
Target Start/End: Original strand, 19962601 - 19962663
Alignment:
| Q |
110 |
aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
172 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
19962601 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa |
19962663 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 110 - 172
Target Start/End: Complemental strand, 20027802 - 20027740
Alignment:
| Q |
110 |
aatggaagaaatgggtcaaaaaattacaaccaaagtttgaatttttatggatcaaaactggaa |
172 |
Q |
| |
|
||||||| || ||||||| ||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
20027802 |
aatggaacaactgggtcacaaaattacaaccaaagtttgaatctttatggatcaaaactggaa |
20027740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 33 - 105
Target Start/End: Original strand, 19962507 - 19962579
Alignment:
| Q |
33 |
ccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaa |
105 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| | ||||| |||| ||||||| ||| ||||||| |
|
|
| T |
19962507 |
ccaccccttttctctatttcctctcaaaccaccacaaattcgccattacaagtaaagtacagtggatggagaa |
19962579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 19967692 - 19967800
Alignment:
| Q |
236 |
gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga |
335 |
Q |
| |
|
|||||||||||||||||||| ||||||||| | ||||| ||||||| ||||| ||| ||| | | ||||| ||||||| |||||||||||||||| | |
|
|
| T |
19967692 |
gtttattggttatcaaggtttgtttttcctgaagattctcatgatactatttcgaaaactgttatccctattgcaatacttttagctcatggaaatagaa |
19967791 |
T |
|
| Q |
336 |
tagctcttg |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
19967792 |
tagctcttg |
19967800 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 236 - 347
Target Start/End: Complemental strand, 20027401 - 20027290
Alignment:
| Q |
236 |
gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga |
335 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | ||||||||||||| ||||||| | ||| | | ||||| ||||||| |||||||||||||||| | |
|
|
| T |
20027401 |
gtttattggttacaaaggtttgtttttcctgaagattcttatgatactatttccacaactgttatccctattgcaatacttttagctcatggaaatagaa |
20027302 |
T |
|
| Q |
336 |
tagctcttggac |
347 |
Q |
| |
|
|||||||||||| |
|
|
| T |
20027301 |
tagctcttggac |
20027290 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 415 - 545
Target Start/End: Original strand, 19963305 - 19963435
Alignment:
| Q |
415 |
gctagatggggtggaatagaaatgatgaaaactaaagtcttgaaaaaggtcatggattgtgcaggatttaataatgaatttctgtggaagccatacgaga |
514 |
Q |
| |
|
||||||||||||||| || | ||||||||| |||| ||||||| ||| | |||||||||||||||||| |||| |||| ||||||| || || |||| |
|
|
| T |
19963305 |
gctagatggggtggagtaaacgtgatgaaaaataaaaacttgaaagaggacttggattgtgcaggatttagaaatggatttttgtggaaaccttatgaga |
19963404 |
T |
|
| Q |
515 |
aatcaccatgcattgaggtttataatgaaaa |
545 |
Q |
| |
|
| ||||| |||||||| || ||| ||||||| |
|
|
| T |
19963405 |
attcaccgtgcattgatgtctatgatgaaaa |
19963435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 33 - 105
Target Start/End: Complemental strand, 20027896 - 20027824
Alignment:
| Q |
33 |
ccaccccatttctctatttcctctcaaaccaccacaaatttgtcattagaagtgaagtacaatgggtggagaa |
105 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||| |||| | ||||| |||| ||||||||||| ||||||| |
|
|
| T |
20027896 |
ccaccccttttctctattttctctcaaaccaccaccaattcgccattacaagtaaagtacaatggatggagaa |
20027824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 344
Target Start/End: Original strand, 19962999 - 19963107
Alignment:
| Q |
236 |
gtttattggttatcaaggttcgtttttccttcatattcttatgataccatttccaaagctgcttttcctatagcaatacatttagctcatggaaatcaga |
335 |
Q |
| |
|
|||||||||||| |||||| ||||||||| | ||||| ||||||| ||||||| | ||| | | ||||| ||||||| |||||||||||||||| | |
|
|
| T |
19962999 |
gtttattggttacaaaggtttgtttttcctgaagattctcatgatactatttccacaactgttatccctattgcaatacttttagctcatggaaatagaa |
19963098 |
T |
|
| Q |
336 |
tagctcttg |
344 |
Q |
| |
|
||||||||| |
|
|
| T |
19963099 |
tagctcttg |
19963107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 174 - 207
Target Start/End: Complemental strand, 266421 - 266388
Alignment:
| Q |
174 |
acttaatagcagttttaacccctaactttctcaa |
207 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
266421 |
acttaatatcagttttaacccctaactttctcaa |
266388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 170 - 203
Target Start/End: Complemental strand, 35615484 - 35615451
Alignment:
| Q |
170 |
gaagacttaatagcagttttaacccctaactttc |
203 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
35615484 |
gaagacttaatagcagttttcacccctaactttc |
35615451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 175 - 207
Target Start/End: Complemental strand, 44356708 - 44356676
Alignment:
| Q |
175 |
cttaatagcagttttaacccctaactttctcaa |
207 |
Q |
| |
|
|||||||||||||||| |||||||||||||||| |
|
|
| T |
44356708 |
cttaatagcagttttagcccctaactttctcaa |
44356676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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