View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_13 (Length: 351)
Name: NF20162_low_13
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 301; Significance: 1e-169; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 19 - 338
Target Start/End: Complemental strand, 36839044 - 36838724
Alignment:
| Q |
19 |
ttaaaatcacagtgaacgctatgattctgtcaattagaatcatagttgcaaatcaatctaaaatatatgacaagttgacaacaatcagctttatgacccc |
118 |
Q |
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| T |
36839044 |
ttaaaatcacagtgaacgctatgattctgtcaattagaatcatggttgcaaatcaatctaaaatatatgacaagttgacaacaatcagctttatgacccc |
36838945 |
T |
|
| Q |
119 |
ttttccctcatataacct-accatagcaattcattggtttttaaacactacaattcatataatggtcccatttcaataggtcacaaattatccaccaaat |
217 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36838944 |
ttttccctcatataaccttaccatagcaattcattggtttttaaacactacaattcatataatggtcccatttcaataggtcacaaattatccaccaaac |
36838845 |
T |
|
| Q |
218 |
catacaccaacttgaagaaaataattgcaaaccacagaagatgataagagagacatgtcaattggattagataaccattgatctttgctcaacttatctc |
317 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36838844 |
catacaccaacttgaagaaaataattgcaaaccacataagatgataagagagacatgtcaattggattagataaccattgatctttgctcaacttatctc |
36838745 |
T |
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| Q |
318 |
ttcaattagcctttatcacct |
338 |
Q |
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||||||||||||||||||||| |
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| T |
36838744 |
ttcaattagcctttatcacct |
36838724 |
T |
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