View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_14 (Length: 351)
Name: NF20162_low_14
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_14 |
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Alignment Details
Target: chr3 (Bit Score: 127; Significance: 2e-65; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 18 - 172
Target Start/End: Original strand, 22220893 - 22221047
Alignment:
| Q |
18 |
aatagatccctctgaatccttctagaatgcatgactcatcgtttaatataactttagtttattttattcttatgagcttaacttggatcattacaaatac |
117 |
Q |
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| T |
22220893 |
aatagatccctctgaatccttctagaatgcatgactcatcacctaatataactttggtttattttattcttatgtgcttaacttagatcattacaaatac |
22220992 |
T |
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| Q |
118 |
tctcttattttttgttttagacaaggcaatttatctcttaaggaaatcattcctc |
172 |
Q |
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| T |
22220993 |
tctcttattttttgttttagacaaggcaaattatctcttaaggaaatcattcctc |
22221047 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 253 - 346
Target Start/End: Original strand, 22221127 - 22221220
Alignment:
| Q |
253 |
cgctccatgaggatgatggagcattattggggggagtggggacagcgtactagccgttgaggtcggcaaagcttatttccgcatttcatctctc |
346 |
Q |
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| T |
22221127 |
cgctccatgaggatgatggtgcattattggggggagtggggacagcgtactagccgttgaggtcggccaagcttatttcagcatttcatttctc |
22221220 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 22220081 - 22220030
Alignment:
| Q |
61 |
taatataactttagtttattttattcttatgagcttaacttggatcattaca |
112 |
Q |
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| T |
22220081 |
taatataacttgagtctattttattcttataagtttaacttggatcattaca |
22220030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 18 - 113
Target Start/End: Original strand, 33524870 - 33524965
Alignment:
| Q |
18 |
aatagatccctctgaatccttctagaatgcatgactcatcgtttaatataactttagtttattttattcttatgagcttaacttggatcattacaa |
113 |
Q |
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||||||||||||| ||||||||||||||||||| |||| ||||| ||||| || |||| ||||||||| ||| |||||| ||||||||||| |
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| T |
33524870 |
aatagatccctctagatccttctagaatgcatgaatcattacttaatgcaacttaggtctattatattcttataagcctaactttgatcattacaa |
33524965 |
T |
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