View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_17 (Length: 307)
Name: NF20162_low_17
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_17 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 18 - 307
Target Start/End: Original strand, 17145783 - 17146078
Alignment:
| Q |
18 |
tttttctcatccaccatggtattttcttgtcctttgtttcattttgaggtgaatgaaacaccatttgaagaaaaggaaacaacccttctgaattttcatc |
117 |
Q |
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| T |
17145783 |
tttttctcatccaccatggtattttcttgtcctttgtttcattttgaggtgaatgaaacaccatttgaagaaaaggaaacaacccttctgaattttcatc |
17145882 |
T |
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| Q |
118 |
attaagatttgttgttttttgagtactcaattgcataaacaacttgttaacaactccaaaacctagccttgaaattgcttcaactttgaaagatggaagt |
217 |
Q |
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| T |
17145883 |
atcaagatttgttgttttttgagtactcaattgcataaacaacttgttaacaactccaaaacctagccttgaaattgcttcaactttgaaagatggaaga |
17145982 |
T |
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| Q |
218 |
ttaggactgaataacataccttt------atcatcatcaagatgagaaatagaagcttttaaaatacctagtgaaacagtaacaatgacatgatct |
307 |
Q |
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| T |
17145983 |
ttaggactgaataacatacctttatcatcatcatcatcatgatgagaaatagaagcttttaaaatacctagtgaaacagtaacaatgacatgatct |
17146078 |
T |
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Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Complemental strand, 26494982 - 26494949
Alignment:
| Q |
274 |
aatacctagtgaaacagtaacaatgacatgatct |
307 |
Q |
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| T |
26494982 |
aatacctagtgaaatagtaacaatgacatgatct |
26494949 |
T |
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