View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_18 (Length: 284)
Name: NF20162_low_18
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 151; Significance: 6e-80; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 1 - 163
Target Start/End: Complemental strand, 8162914 - 8162752
Alignment:
| Q |
1 |
aacccaatttctttcataatctttatgtcactctacaaaatattttcctcataagagtaagacaaaaactgttgaaattttttagtaatcgtaccttgta |
100 |
Q |
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| T |
8162914 |
aacccaatttctttcataatctttatgtcactctacaaaatattttcctcataagagtaagacaaaaactgttgaaaattttcagtaatcttaccttgta |
8162815 |
T |
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| Q |
101 |
tcgatgataaaaatcagctccaatattaccactgctatggtccccaatcttttctgctcaatc |
163 |
Q |
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| T |
8162814 |
tcgatgataaaaatcagctccaatattaccactgctatggtccccaatcttttctgctcaatc |
8162752 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 161
Target Start/End: Complemental strand, 8138780 - 8138710
Alignment:
| Q |
91 |
gtaccttgtatcgatgataaaaatcagctccaatattaccactgctatggtccccaatcttttctgctcaa |
161 |
Q |
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| T |
8138780 |
gtaccttgtatcgatgataaaaatcagctcctacattaccactgctatggtcccaaatcttatctgctcaa |
8138710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 178 - 216
Target Start/End: Complemental strand, 8162731 - 8162693
Alignment:
| Q |
178 |
ttcttgttaatttgatccatctatctataaatcaaaaag |
216 |
Q |
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| T |
8162731 |
ttcttgttaatttgatccatctatctataaatcaaaaag |
8162693 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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