View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_2 (Length: 550)
Name: NF20162_low_2
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 432; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 432; E-Value: 0
Query Start/End: Original strand, 12 - 534
Target Start/End: Complemental strand, 35720058 - 35719518
Alignment:
| Q |
12 |
attatactctctaattatgtcatgtgattagatgtatccaagttggcttagggatatatatat--ctatgtgatgcatgcatgtgttacatttcaaagtc |
109 |
Q |
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| T |
35720058 |
attatactctctaattatgtcatgtgattggatgtatccaacttggcttagggatatatatatatctatgtgatgcatgcatgtgttacatttcaaagtc |
35719959 |
T |
|
| Q |
110 |
tgtggatgcgtgtgatttttgctctattatatacgcacccataaatatattggctagagcttatatatgtgggatgtggtcctcatatagaacatagagg |
209 |
Q |
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| T |
35719958 |
tgtggatgcgtgtgatttttgctctattatatacgcacccataaatatattggctagagcttatatatgtgggatgtggtcctcatatagaacatagagg |
35719859 |
T |
|
| Q |
210 |
gtgattaattgaagctctagcaattattttgattagtgaaggataaccaccagaacaaaccttgatggtcagaaacagcaaaggattagtactattcaca |
309 |
Q |
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| T |
35719858 |
gtgattaattgaagctctagcaattattttgattagtgaaggataaccaccagaacaaaccttgatggtcagaaacagcaaaggattagtactattcaca |
35719759 |
T |
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| Q |
310 |
gtnnnnnnntatttgaaccttaaaatgcctttaaaacaggatattatcgtggaaacctttttagattgattgtaagcaataagccttgaaacaaaaagat |
409 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35719758 |
gtaaaaaaatatttgaaccttaaaatgcctttaaaacaggatattatcgtggaaacctttttagattgattgtaagcaataagccttgaaacaaaaagat |
35719659 |
T |
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| Q |
410 |
----------------ttctcacatgtgtaattgtgaagactaatttcttaaatcaggttagactatatatagagcaaaaatactactccaaaaatgtta |
493 |
Q |
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| T |
35719658 |
tcttttaaatcaaatattctcacatgtataattgtgaagactaatttcttaaatcagattagactatatatagagcaaaaatactactccaaaaatgtta |
35719559 |
T |
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| Q |
494 |
acattattgtatttttatggttagaattctaactcaaaatt |
534 |
Q |
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| T |
35719558 |
atattattgtattttcatggttagaattctaactcaaaatt |
35719518 |
T |
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