View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_22 (Length: 268)
Name: NF20162_low_22
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_22 |
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Alignment Details
Target: chr7 (Bit Score: 224; Significance: 1e-123; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 37324874 - 37324623
Alignment:
| Q |
1 |
accactgccactaattactatcaaagcctatctccaacaatactgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgt |
100 |
Q |
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| T |
37324874 |
accacggccactaattactatcaaagcctatctccaacaatgctgggttttcaagaagagaaattcactcaccttcacttttactttcatgacattgtgt |
37324775 |
T |
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| Q |
101 |
caggaccaaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccattgac |
200 |
Q |
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| T |
37324774 |
cgggaccaaaaccaagcatggtatttatagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccattgac |
37324675 |
T |
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| Q |
201 |
ggctgggcccgaacgtgactcgaaacttgtgggtaaggctcaaggaatttac |
252 |
Q |
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| T |
37324674 |
ggctgggcccgaacgtgactcgaaacttgtgggtaaggctcaaggaatttac |
37324623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37317313 - 37317063
Alignment:
| Q |
2 |
ccactgccactaattactatcaaagcctatctccaacaatactgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtc |
101 |
Q |
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|||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
37317313 |
ccactgccactaattactatcaaaacctatccccaacaatgttgggttttcaagaagagaaattcactcaccttcacttttactttcacgacatcgtgtc |
37317214 |
T |
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| Q |
102 |
aggaccaaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccattgacg |
201 |
Q |
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| T |
37317213 |
aggaccaaaacctagcatggtatttgtagctgagcccaatggcaaggtaaaaaatgcgttgccattcgggaccgttgtggccatggatgacccattgact |
37317114 |
T |
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| Q |
202 |
gctgggcccgaacgtgactcgaaacttgtgggtaaggctcaaggaatttac |
252 |
Q |
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| T |
37317113 |
gctggtcctgaacgtgactcgaaacttgtgggtaaggctcaaggaatttac |
37317063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 2 - 252
Target Start/End: Complemental strand, 37320892 - 37320642
Alignment:
| Q |
2 |
ccactgccactaattactatcaaagcctatctccaacaatactgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtc |
101 |
Q |
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|||||||||||||||||||| |||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37320892 |
ccactgccactaattactataaaagcctatccccaacaatgctgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtc |
37320793 |
T |
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| Q |
102 |
aggaccaaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccattgacg |
201 |
Q |
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| T |
37320792 |
aggaccaaaacctagcatggtatttgtagctgagcccaatggcaaggtaaaaaatgccttgccattcgggacagttgtggcgatggatgaccccttgacg |
37320693 |
T |
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| Q |
202 |
gctgggcccgaacgtgactcgaaacttgtgggtaaggctcaaggaatttac |
252 |
Q |
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| T |
37320692 |
gctggacccgaacgtgaatcaaaacttgtgggtaaggctcaaggaatttac |
37320642 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 7 - 252
Target Start/End: Complemental strand, 37306963 - 37306718
Alignment:
| Q |
7 |
gccactaattactatcaaagcctatctccaacaatactgggttttcaagaagagaaattcactcaccttcatttttactttcacgacatcgtgtcaggac |
106 |
Q |
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||||| |||||||| ||||| |||||||| | | ||||||||||||||||||||||||| |||||||| || || || |||||| | || ||| | |
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| T |
37306963 |
gccaccaattactacaaaagcttatctccagctttgttgggttttcaagaagagaaattcacccaccttcacttctatttccacgacgttatggaaggcc |
37306864 |
T |
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| Q |
107 |
caaaaccaagcatggtatttgtagctgagcctaatggcaaggtaaaaaatgcgttgccattcgggacggttgtggccatggacgatccattgacggctgg |
206 |
Q |
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| T |
37306863 |
ccaaagcaagcacagtgatagtagccgagcccaacggcaaggctgaaaactctcttccattcgggacagtggtggccatggatgatccgttgacgattgg |
37306764 |
T |
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| Q |
207 |
gcccgaacgtgactcgaaacttgtgggtaaggctcaaggaatttac |
252 |
Q |
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||| |||| |||||||||||| |||||||| ||||||||||||||| |
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| T |
37306763 |
gcctgaacttgactcgaaactcgtgggtaaagctcaaggaatttac |
37306718 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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