View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_28 (Length: 230)
Name: NF20162_low_28
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 217
Target Start/End: Complemental strand, 40691623 - 40691419
Alignment:
| Q |
13 |
agcacagagatgcaacaagccaagaaagtaacaaaactggctgaatagtgatatttttgttttgagagttaaggtagttctaatttatattgaaatttct |
112 |
Q |
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| T |
40691623 |
agcacagagatgcaacaagccaagaaagtaacaaaactggctgaatagtgatatttttgttttgagagtaaaggtagttctaatttatattgaaatttct |
40691524 |
T |
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| Q |
113 |
cttttaattattctaaaaacaactaatgtgacatagattctatattttaaaaataaaactggtacattttatttacaagagacaactatagagctgataa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40691523 |
cttttaattattctaaaaacaactaatgtgacatagattctatattttaaaaataaaactggtacattttatttacaagagacaactatagagctgataa |
40691424 |
T |
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| Q |
213 |
ttgtg |
217 |
Q |
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||||| |
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| T |
40691423 |
ttgtg |
40691419 |
T |
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