View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_3 (Length: 545)
Name: NF20162_low_3
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 113; Significance: 6e-57; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 6e-57
Query Start/End: Original strand, 17 - 133
Target Start/End: Original strand, 3400809 - 3400925
Alignment:
| Q |
17 |
aattactctatctataatgcattcaaatcatgacttgtctgtgtgtatatctatgtccacgtgtcccaataaaaaataacattatgtgccaaaattgaca |
116 |
Q |
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| T |
3400809 |
aattactctatctataatgcattcaaatcatgacttgtctgtgtgtatatctatgtccacgtgtcccaataaaaaataacattatgtgccaaaattgaca |
3400908 |
T |
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| Q |
117 |
gataattagatttttat |
133 |
Q |
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| T |
3400909 |
aataattagatttttat |
3400925 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 276 - 369
Target Start/End: Original strand, 3401160 - 3401253
Alignment:
| Q |
276 |
tgacaaatatagtaaacaaggtacctaaattaagaaattaagtgaacggcaaatagatcatgcatattctctattgtttataatcagtaagaaa |
369 |
Q |
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| T |
3401160 |
tgacaaatgtagtaaacaaggtacctaaattaagaaattaagtgaatggaaaatagatcatgcatattctctattgtttataatcagtaagaaa |
3401253 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 200 - 282
Target Start/End: Original strand, 3400992 - 3401066
Alignment:
| Q |
200 |
gtcgaatggctattgatatcaaataacaccatctaaaaaactaaaatactaatatccaaaccacaatgggtgttgatgacaaa |
282 |
Q |
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| T |
3400992 |
gtcgaatggctattgatatcaaataacaccat--------ctaaaatactaatatccaaaccacaatggatgttgattacaaa |
3401066 |
T |
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Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 31 - 127
Target Start/End: Complemental strand, 21533356 - 21533260
Alignment:
| Q |
31 |
taatgcattcaaatcatgacttgtctgtgtgtatatctatgtccacgtgtcccaataaaaaataacattatgtgccaaaattgacagataattagat |
127 |
Q |
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| T |
21533356 |
taatgctttcaaatcatgacttgtctctgtgtatatctatgtccaagtgtcctaatcaaaaataacattgttttccaaaattgacatataactagat |
21533260 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 41574366 - 41574446
Alignment:
| Q |
17 |
aattactctatctataatgcattcaaatcatgacttgtctgtgtgtatatctatgtccacgtgtcccaataaaaaataaca |
97 |
Q |
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|||||||||| ||||||||||||||||||||||||||||| ||||||| |||||| | | | |||| |||||||||||||| |
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| T |
41574366 |
aattactctagctataatgcattcaaatcatgacttgtctctgtgtatgtctatgacaatgcgtcctaataaaaaataaca |
41574446 |
T |
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