View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_4 (Length: 457)
Name: NF20162_low_4
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 390; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 14 - 440
Target Start/End: Original strand, 39700933 - 39701368
Alignment:
| Q |
14 |
tacttgattcaatgattgagtacatatacacatagaaattcagtttcaagagacaaatccagttattataatgtaatattattatcgtgcaggttccacc |
113 |
Q |
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| T |
39700933 |
tacttgattcaatgattgagtacatatacacatagaaattcagtttcaagagacaaatccagttattataatgtaatattattatcgtgcaggttccacc |
39701032 |
T |
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| Q |
114 |
gggcacaccagtggtgaatgcattgtcaaagcagcgagcaatgcttgaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctc |
213 |
Q |
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| T |
39701033 |
gggcacaccagtggtgaatgcattgtcaaagcagcgagcaatgcttgaaaacatcatgagagcttgtgttggattggctccagagaacaacatgatcctc |
39701132 |
T |
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| Q |
214 |
gagtacaagtgaacgaggagatagaaccatagttgttggaactttctagtttctagctgaatcagaaaacttgctactgtcct----------ttttgtt |
303 |
Q |
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| T |
39701133 |
gagtacaagtgaacgaggagatagaaccatagttgttggaactttctagtttctagctgaatcagaaaacttgctactgtcctttttattttattttatt |
39701232 |
T |
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| Q |
304 |
ttattttccatttggtttgctgatgttttcactagtataatatttgatagtctttgctcccacgtgcttttagagcagggcttagcttgtttttgggtac |
403 |
Q |
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| T |
39701233 |
ttattttccatttggtttgctgatgttttcactagtataatatttgatagtctttgctcccacgtgc-tttagagcagggcttagcttgtttttgggtac |
39701331 |
T |
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| Q |
404 |
atgaaaatataaatatttatctacttgtgctcaattg |
440 |
Q |
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| T |
39701332 |
atgaaaatataaatatttatctacttgtgctcaattg |
39701368 |
T |
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Back To:
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Target: chr8 (Bit Score: 76; Significance: 6e-35; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 103 - 226
Target Start/End: Original strand, 38080866 - 38080989
Alignment:
| Q |
103 |
caggttccaccgggcacaccagtggtgaatgcattgtcaaagcagcgagcaatgcttgaaaacatcatgagagcttgtgttggattggctccagagaaca |
202 |
Q |
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||||||||||| || |||||||| ||||||||||||||||||||| || | ||||| |||||||| ||||||||||||||||||||||||| ||||||| |
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| T |
38080866 |
caggttccaccaggtacaccagttgtgaatgcattgtcaaagcagagatctatgctggaaaacattctgagagcttgtgttggattggctcctgagaaca |
38080965 |
T |
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| Q |
203 |
acatgatcctcgagtacaagtgaa |
226 |
Q |
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| T |
38080966 |
acatgatccttgaatacaagtgaa |
38080989 |
T |
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