View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20162_low_6 (Length: 431)
Name: NF20162_low_6
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20162_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 138 - 398
Target Start/End: Complemental strand, 32724718 - 32724461
Alignment:
| Q |
138 |
cttctatgtctatctctctctttccgatggatggtttcccgatttccgccatggtagtcgcgttattgcacggaagtggtagttgcactatttctggaat |
237 |
Q |
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| T |
32724718 |
cttctttgtctatctctctctttccgatggatgatttcccgatttccgccatggtagtcgtgttattgcacggaagtggaagtcgaactatttctgaaat |
32724619 |
T |
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| Q |
238 |
taattttaaaaaacagatagaaggaatgaacgtagtggtgaaagtaaatgttatattatgaatattattcatgaatgaattttgaaagagaaagatatta |
337 |
Q |
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| T |
32724618 |
taa-tttaaaaaacagatagaaggaatgaacgtagtggtgaaagtaaatgttgtatcatgaatattattcatgaaagaattttgaaaga-aacgatatta |
32724521 |
T |
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| Q |
338 |
aaattaaaatttagaaacatacttggcaatgtcttctttcctcttctgtaagtgatttcac |
398 |
Q |
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| T |
32724520 |
aaattaaaatttagaaacatacttggcaatg-attttttcctcttctgtaagtgatttcac |
32724461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 278 - 398
Target Start/End: Complemental strand, 4001937 - 4001817
Alignment:
| Q |
278 |
aaagtaaatgttatattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcaatgtcttctttc |
377 |
Q |
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| T |
4001937 |
aaagtaaatgttgtattatgaatattattcatgaatgaattttgaaagagaaagatattaaaattaaaatttagaaacatacttggcattgtcttctttc |
4001838 |
T |
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| Q |
378 |
ctcttctgtaagtgatttcac |
398 |
Q |
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| T |
4001837 |
ctcttatgtaagtgatttcac |
4001817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 23 - 76
Target Start/End: Complemental strand, 4002007 - 4001954
Alignment:
| Q |
23 |
ttcaacacctttctcaaaaacatgttaacccaaataacttgcattaccattgat |
76 |
Q |
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| T |
4002007 |
ttcaacatctttctcaaaaacatgttaacccaaataacttgcgttaccattgat |
4001954 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 127
Target Start/End: Complemental strand, 32724781 - 32724742
Alignment:
| Q |
88 |
tactctttctctaataaacatgtaaacccatcatctctct |
127 |
Q |
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| T |
32724781 |
tactctttctctaataaacatgtaaacccataatctctct |
32724742 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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