View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20162_low_8 (Length: 424)

Name: NF20162_low_8
Description: NF20162
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20162_low_8
NF20162_low_8
[»] chr7 (4 HSPs)
chr7 (296-408)||(6323046-6323159)
chr7 (8-103)||(6323184-6323279)
chr7 (238-408)||(6324128-6324295)
chr7 (200-286)||(28126367-28126453)
[»] chr4 (2 HSPs)
chr4 (200-286)||(52518952-52519038)
chr4 (259-361)||(3274451-3274554)
[»] scaffold0286 (1 HSPs)
scaffold0286 (237-354)||(15198-15316)
[»] chr6 (2 HSPs)
chr6 (237-354)||(2161790-2161908)
chr6 (200-286)||(5377070-5377156)
[»] chr2 (2 HSPs)
chr2 (297-358)||(20515991-20516053)
chr2 (192-240)||(31155477-31155525)
[»] chr1 (1 HSPs)
chr1 (200-286)||(17449502-17449588)
[»] chr3 (1 HSPs)
chr3 (204-265)||(6789833-6789894)


Alignment Details
Target: chr7 (Bit Score: 102; Significance: 2e-50; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 296 - 408
Target Start/End: Complemental strand, 6323159 - 6323046
Alignment:
Q  296 ttatgtgtattcatgg-aagaatactcatagaaattcatattgaatgaatatagattgaaaaaagataagatgagatgcaatgaagtgacttatttatag 394  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  6323159 ttatgtgtattcatgggaagaatactcatagaaattcatattgaatgaatatagattgaaaaaagataagatgagatgcaatgaagtgatttatttatag 6323060  T
Q  395 ttctctatgatact 408  Q
    ||||||||||||||    
T  6323059 ttctctatgatact 6323046  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 103
Target Start/End: Complemental strand, 6323279 - 6323184
Alignment:
Q  8 aggagcacagagacaaatcgccgccacaaacacaagcgaggaaaacagtgatgatcgaactgaattcactccacaaaaagaattgaattttgtgaa 103  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6323279 aggaacactgagacaaatcgccgccacaaacacaagcgaggaaaacagtgatgatcgaactgaattcactccacaaaaagaattgaattttgtgaa 6323184  T

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Target: chr7; HSP #3
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 238 - 408
Target Start/End: Complemental strand, 6324295 - 6324128
Alignment:
Q  238 tgttgagaatcacggagtcaaagggagaaagattatagatttaagcaagctggagggcttatgtgtattcatg-gaagaatactcatagaaattcatatt 336  Q
    |||||||||| | |||||||||||||||||||| ||| ||    ||||| | ||| || |||||||||| ||| |||||||||||||  |||||||||||    
T  6324295 tgttgagaataatggagtcaaagggagaaagatcatatat----gcaagatagagagcatatgtgtatttatgagaagaatactcattaaaattcatatt 6324200  T
Q  337 gaatgaatatagattgaaaaaagataagatgagatgcaatgaagtgacttatttatagttctctatgatact 408  Q
    ||||||||||||||||||||||||||| ||| ||| |||||||||||| |||||||||| |||||| |||||    
T  6324199 gaatgaatatagattgaaaaaagataaaatgggatacaatgaagtgacatatttatagtcctctataatact 6324128  T

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Target: chr7; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 286
Target Start/End: Original strand, 28126367 - 28126453
Alignment:
Q  200 atcttcatcttcctccctcgagtatcactctgataccatgttgagaatcacggagtcaaagggagaaagattatagatttaagcaag 286  Q
    |||||||||||||||||| | ||||| ||||||||||||||||| ||||| ||| ||| |||||||||||| |||||| ||||||||    
T  28126367 atcttcatcttcctccctagggtatcgctctgataccatgttgaaaatcatggaatcatagggagaaagatcatagatgtaagcaag 28126453  T

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Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 52519038 - 52518952
Alignment:
Q  200 atcttcatcttcctccctcgagtatcactctgataccatgttgagaatcacggagtcaaagggagaaagattatagatttaagcaag 286  Q
    |||||||||||||||||| | ||||| ||||||||||||||||| ||||| ||| ||| |||||||||||| |||||| ||||||||    
T  52519038 atcttcatcttcctccctagggtatcgctctgataccatgttgaaaatcatggaatcatagggagaaagatcatagatgtaagcaag 52518952  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 361
Target Start/End: Original strand, 3274451 - 3274554
Alignment:
Q  259 agggagaaagattatagatttaagcaagctggagggcttatgtgtattcatg-gaagaatactcatagaaattcatattgaatgaatatagattgaaaaa 357  Q
    ||||||||| || ||| || |||||||  | ||| || |||||||||||||| ||||||||||| || | ||| ||||||||| |||||||||||| |||    
T  3274451 agggagaaacatcatatatgtaagcaaaatagagagcatatgtgtattcatgtgaagaatactcgtatagatttatattgaataaatatagattgataaa 3274550  T
Q  358 agat 361  Q
    ||||    
T  3274551 agat 3274554  T

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Target: scaffold0286 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 354
Target Start/End: Complemental strand, 15316 - 15198
Alignment:
Q  237 atgttgagaatcacggagtcaaagggagaaagattatagatttaagcaagctggagggcttatgtgtattcatg-gaagaatactcatagaaattcatat 335  Q
    ||||||| ||||| ||| ||| |||||  ||||| |||| | |||||||| | ||| || |||||||||| ||| ||||||||||| |||||||||||||    
T  15316 atgttgaaaatcatggaatcatagggatgaagatcatagttgtaagcaagatagagagcatatgtgtatttatgagaagaatactcgtagaaattcatat 15217  T
Q  336 tgaatgaatatagattgaa 354  Q
    ||||||| |||||||||||    
T  15216 tgaatgagtatagattgaa 15198  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 237 - 354
Target Start/End: Original strand, 2161790 - 2161908
Alignment:
Q  237 atgttgagaatcacggagtcaaagggagaaagattatagatttaagcaagctggagggcttatgtgtattcatg-gaagaatactcatagaaattcatat 335  Q
    ||||||| ||||| ||| ||| |||||  ||||| |||| | |||||||| | ||| || |||||||||| ||| ||||||||||| |||||||||||||    
T  2161790 atgttgaaaatcatggaatcatagggatgaagatcatagttgtaagcaagatagagagcatatgtgtatttatgagaagaatactcgtagaaattcatat 2161889  T
Q  336 tgaatgaatatagattgaa 354  Q
    ||||||| |||||||||||    
T  2161890 tgaatgagtatagattgaa 2161908  T

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Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 5377156 - 5377070
Alignment:
Q  200 atcttcatcttcctccctcgagtatcactctgataccatgttgagaatcacggagtcaaagggagaaagattatagatttaagcaag 286  Q
    |||||||||||||||||| | ||||| ||||||||||||||| ||||||| ||| ||| |||||||||  | |||||| ||||||||    
T  5377156 atcttcatcttcctccctagggtatcgctctgataccatgttaagaatcatggaatcatagggagaaaagtcatagatgtaagcaag 5377070  T

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Target: chr2 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 297 - 358
Target Start/End: Original strand, 20515991 - 20516053
Alignment:
Q  297 tatgtgtattcatg-gaagaatactcatagaaattcatattgaatgaatatagattgaaaaaa 358  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  20515991 tatgtgtaatcatgagaagaatactcatagaaattcatattgaatgaatatagattgcaaaaa 20516053  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 192 - 240
Target Start/End: Original strand, 31155477 - 31155525
Alignment:
Q  192 gaagcacaatcttcatcttcctccctcgagtatcactctgataccatgt 240  Q
    |||||||| ||||||||| | ||||||| ||||| ||||||||||||||    
T  31155477 gaagcacagtcttcatctacatccctcgggtatcgctctgataccatgt 31155525  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 200 - 286
Target Start/End: Complemental strand, 17449588 - 17449502
Alignment:
Q  200 atcttcatcttcctccctcgagtatcactctgataccatgttgagaatcacggagtcaaagggagaaagattatagatttaagcaag 286  Q
    |||||||||||||| ||| | ||||| ||||||||||||||| ||||||| ||| ||| |||||||||| | |||||| ||||||||    
T  17449588 atcttcatcttccttcctagggtatcgctctgataccatgttaagaatcatggaatcatagggagaaaggtcatagatgtaagcaag 17449502  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 204 - 265
Target Start/End: Complemental strand, 6789894 - 6789833
Alignment:
Q  204 tcatcttcctccctcgagtatcactctgataccatgttgagaatcacggagtcaaagggaga 265  Q
    |||||||||||||| | ||||| ||||||||||||||| ||||||| ||| ||| |||||||    
T  6789894 tcatcttcctccctagggtatcgctctgataccatgttaagaatcatggaatcatagggaga 6789833  T

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