View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20163_high_1 (Length: 715)
Name: NF20163_high_1
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 17 - 702
Target Start/End: Complemental strand, 44499007 - 44498319
Alignment:
| Q |
17 |
gaagttgggacgagcaacagggggcgttgtttactgcaatgaaggttatttcccccctcgtaaactttttgctagcttccccactgctgacttgtctata |
116 |
Q |
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| T |
44499007 |
gaagttgggacgagcaacagggggcgttgtttgctgcaatgaaggttatttcccccctcgtaaactttttgctagcttccccactgctgacttgtctata |
44498908 |
T |
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| Q |
117 |
acatgcttactttattctagaagagcactgctattgtattgcctataaatacaatttatcatatgcaaaa-tacaattaatctattccaacaatcgttgc |
215 |
Q |
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| T |
44498907 |
acatgcttattttattctagaagagcactgctattgtattgcctataaatataatttatcatatgcaaaaatacaattaatctattcctacaatcgttgc |
44498808 |
T |
|
| Q |
216 |
caagcctatcaaatcctccatataaagaagactgaagattatttattgccttttgaagttgcaaagaaaaattacactttccgatccatttcaacaatac |
315 |
Q |
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| T |
44498807 |
caagcctatcaaatcctccatataaagaagactgaagattatttattgctttttgaagttgcaaagaaaaattacactttccgatccatttcaacaatac |
44498708 |
T |
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| Q |
316 |
ataaaataaatgagaattggggacattcatcttcagtgtaaaatagttttacaccgacttccaatgagaatccaacattttgccgttatttttaaaattc |
415 |
Q |
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| T |
44498707 |
ataaaataaatgagaattggggacattcatcttcagtgtaaaatagttttacaccgacttccaatgagaatccaacattttgccgttatttttaaaattc |
44498608 |
T |
|
| Q |
416 |
tggttataaagcagaattacgtggcaatattctgaac--tctcatttacattgacaatatgtctccgttaaactctttatgaaagaagggagagatacca |
513 |
Q |
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| T |
44498607 |
tggttataaagcagacttacgtggcaatattctgaactctctcatttacattgacaatatgtctccgttaaactctttatgaaagaagggagagatacca |
44498508 |
T |
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| Q |
514 |
ttacacctttcaactcaaatcaaggaaaaatggaactccagtagagttcaaccattcatttccttgtataaactgtctaacagtgaactgacttgcctca |
613 |
Q |
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| T |
44498507 |
ttacacctttcaactcaaatcaaggaaaaatggaactccagtagagttcaaccattcatttccttgtataaactgtctaacagtgaactgacttgcctca |
44498408 |
T |
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| Q |
614 |
gtagcgtttgtaatgactttataacctggccacgtaactctagcacttgtattcgaaccaggacctctattcttatattcaccatagaa |
702 |
Q |
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| T |
44498407 |
gtagcgtttgtaatgactttataacctggccacgtaactctagcacttgtattcgaaccaggacctctattcttatattcaccatagaa |
44498319 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 348 - 412
Target Start/End: Original strand, 10823724 - 10823788
Alignment:
| Q |
348 |
tcagtgtaaaatagttttacaccgacttccaatgagaatccaacattttgccgttatttttaaaa |
412 |
Q |
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| T |
10823724 |
tcagtctaaactagttttacaccgaagtccaatgagaatccaatattttgtggttatttttaaaa |
10823788 |
T |
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