View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20163_high_2 (Length: 715)
Name: NF20163_high_2
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_high_2 |
 | |
|
| [»] scaffold0047 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 679; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 679; E-Value: 0
Query Start/End: Original strand, 18 - 704
Target Start/End: Original strand, 47366605 - 47367291
Alignment:
| Q |
18 |
caagaccaggatcaagagcagctactggatccacatgcccggaaccataatctaacggtgtagcaggtatcccagtagcaacatcttttatggtttgccc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47366605 |
caagaccaggatcaagagcagctactggatccacatgcccggaaccataatccaacggtgtagcaggtatcccagtagcaacatcttttatggtttgccc |
47366704 |
T |
|
| Q |
118 |
atttttgtacgtgccataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagcagctaacccactt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47366705 |
atttttgtacgtgccataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagcagctaacccactt |
47366804 |
T |
|
| Q |
218 |
acatgggggcatgacatggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccag |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47366805 |
acatgggggcatgacatggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccag |
47366904 |
T |
|
| Q |
318 |
ctagaatgttgactcctggagctatcaggtctggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatgg |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47366905 |
ctagaatgttgactcctggagctatcaggtcgggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatgg |
47367004 |
T |
|
| Q |
418 |
ttgaaccccgaaccgggtaccgccaaatgcaattttagcagttggattgggagctgaagaagcatacttctttatttcattgcttgctttctctcccaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47367005 |
ttgaaccccgaaccgggtaccgccaaatgcaattttagcagttggattgggagctgaagaagcatacttctttatttcattgcttgctttctctcccaaa |
47367104 |
T |
|
| Q |
518 |
gctgctgcagggaggagaaaggagtcagcaactagctcttcaccataatcttggttgtttgctaaaatcatcccaattcctcctgcgcgtttgaccacca |
617 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47367105 |
gctgctgcagggaggagaaaggagtcagcaactagctcttcaccataatcttggttgtttgctaaaatcatcccaattcctcctgcgcgtttgaccacca |
47367204 |
T |
|
| Q |
618 |
aactcttttcagctctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatcaaactatctgtgctgc |
704 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47367205 |
aactcttttcagctctaggatttcctcctcggtcacatatcactatttttcctgaaactttgctaggaatcaaactatctgtgctgc |
47367291 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 5375969 - 5375564
Alignment:
| Q |
18 |
caagaccaggatcaagagcagctactggatccacatgcccggaaccataatctaacggtgtagcaggtatcccagtagcaacatcttttatggtttgccc |
117 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||||| || ||||| ||| |||| || || ||||| ||| |||| || ||||||||| || ||||| || |
|
|
| T |
5375969 |
caagaccaggatcaagggcagatacaggatccacgtgtccggatccaaaatcaaagggagtagccggtttcccggttgcaacatctacaattgtttgtcc |
5375870 |
T |
|
| Q |
118 |
atttttgtacgtgccataagacgtggtcatgagtgcggatcttatagctgcaggactccattcaggatgggctcccttaagaagagcagctaacccactt |
217 |
Q |
| |
|
||||||||||| | || | |||||||| ||||| || | |||||| ||||| |||||||| || | || || |||| | ||||||||| ||||| |
|
|
| T |
5375869 |
atttttgtacgaggtgtatgctgtggtcattagtgctgaccgtatagcagcagggctccattcggggtaagcacctttaactatagcagctaaaccactc |
5375770 |
T |
|
| Q |
218 |
acatgggggcatgacatggatgtgccagagatgatgttgaagctcacatgccttgtgtcaactgacaagccagttggtccaactttcccactccatccag |
317 |
Q |
| |
|
| || || ||||||||||| || || || || |||||||| |||| ||||| | |||| | ||||| ||||| |||||| || |||| || | |
|
|
| T |
5375769 |
gcgtgaggacatgacatggaagttcccgatataatgttgaaattcacgtgcctcttatcaagagctaagccggttggaccaactgcaccggtccaaccgg |
5375670 |
T |
|
| Q |
318 |
ctagaatgttgactcctggagctatcaggtctggtttgagtatttttggtgtgagtatatttggtcctctagagctgaaagctgccaccactggggatgg |
417 |
Q |
| |
|
||| |||||| || ||||||||||| | || |||||||| || |||||||| | ||||||||||||| || ||||| ||||| |||||||| || || |
|
|
| T |
5375669 |
ctaaaatgtttacacctggagctattaaatccggtttgagaatctttggtgttaaactatttggtcctcttgaactgaatgctgctaccactggtgaagg |
5375570 |
T |
|
| Q |
418 |
ttgaac |
423 |
Q |
| |
|
|||||| |
|
|
| T |
5375569 |
ttgaac |
5375564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 206 - 258
Target Start/End: Complemental strand, 68213 - 68161
Alignment:
| Q |
206 |
gctaacccacttacatgggggcatgacatggatgtgccagagatgatgttgaa |
258 |
Q |
| |
|
||||| ||||||||||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
68213 |
gctaatccacttacatgagggcatgacatggatgtgcctgagataatgttgaa |
68161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 206 - 258
Target Start/End: Original strand, 5725682 - 5725734
Alignment:
| Q |
206 |
gctaacccacttacatgggggcatgacatggatgtgccagagatgatgttgaa |
258 |
Q |
| |
|
||||| |||||| |||| |||||||||||||||||||| ||||| |||||||| |
|
|
| T |
5725682 |
gctaatccacttgcatgagggcatgacatggatgtgcctgagataatgttgaa |
5725734 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 202 - 255
Target Start/End: Original strand, 39738456 - 39738509
Alignment:
| Q |
202 |
agcagctaacccacttacatgggggcatgacatggatgtgccagagatgatgtt |
255 |
Q |
| |
|
||||||||| ||||| ||||| ||||| ||||||||||| |||||||| ||||| |
|
|
| T |
39738456 |
agcagctaaaccactcacatgagggcaggacatggatgttccagagataatgtt |
39738509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University