View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20163_high_5 (Length: 476)
Name: NF20163_high_5
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_high_5 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 3 - 463
Target Start/End: Original strand, 28846967 - 28847430
Alignment:
| Q |
3 |
caatctttaatgaaccacccaaaaccaaactattcttgttcacaataagttccttctttccattcccatttgatgatgactcgtcaacagaacaatatct |
102 |
Q |
| |
|
||||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28846967 |
caatcttcaatgaacaacccaaaacgaaactattcttgttcacaataagttccttctttccattcccatttgatgatgactcgtcaacagaacaatatct |
28847066 |
T |
|
| Q |
103 |
tttcttaatcggaaggggaaattcatgactcttttgctcatcaatcgacaaagtacaaaagtactta---gacataagatgtaaaagatttgtagcagcc |
199 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || |
|
|
| T |
28847067 |
tttcttaatcggaaggggaaattcaggactcttttgctcatcaatcgacaaagtacaaaagtacttattagacataagatgtaaaagatttgtagcaccc |
28847166 |
T |
|
| Q |
200 |
tcaacaacaccaatacattttcttcctcttttacctctattttgccattttggtaaagaaagattatcttctttattttgttgagtagaatatttagaac |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
28847167 |
tcaacaacaccaatacattttcttcctcttttacctctattttgccattttggtaaagaaagattatcttctttattctgttgagtagaatatttagaac |
28847266 |
T |
|
| Q |
300 |
tgttagatgaaaaagatttttgaatatcatgatttgaaggaggcctaactcctttagaaaccacattaggatgagatctgatcatgtgaccatacaaaac |
399 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||| ||||| |
|
|
| T |
28847267 |
tgttagatgaaaaagatttttgaatatcataatttgaaggaggactaactcctttagaaaccacatcaagatgagatctgatcatgtgaccataaaaaac |
28847366 |
T |
|
| Q |
400 |
attcttggttggaaacttcttctcgcaaatataacaagtttgtttctttttgccagtgatttct |
463 |
Q |
| |
|
||||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
28847367 |
attcttgattggaaacttgttctcgcaaatataacaagtttgtttctttttgccagcgatttct |
28847430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 5e-20; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 381 - 447
Target Start/End: Complemental strand, 43796575 - 43796509
Alignment:
| Q |
381 |
tcatgtgaccatacaaaacattcttggttggaaacttcttctcgcaaatataacaagtttgtttctt |
447 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||| ||| |||||||| ||||||| |
|
|
| T |
43796575 |
tcatgtgaccatacaaagcattcttggttggaaacttcttctcgcagatagaacaagttggtttctt |
43796509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 258
Target Start/End: Complemental strand, 43796732 - 43796656
Alignment:
| Q |
182 |
aaaagatttgtagcagcctcaacaacaccaatacattttcttcctcttttacctctattttgccattttggtaaaga |
258 |
Q |
| |
|
|||||||||| ||| ||||| ||| ||||||||| ||||| |||||| || |||| || ||||||||||| ||||| |
|
|
| T |
43796732 |
aaaagatttgcagccgcctcgacactaccaatacactttctacctcttctatctctcttctgccattttggcaaaga |
43796656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University