View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20163_high_6 (Length: 421)
Name: NF20163_high_6
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_high_6 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 10 - 404
Target Start/End: Original strand, 48527533 - 48527931
Alignment:
| Q |
10 |
aagaatataagggattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattg |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48527533 |
aagaatataagggattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattg |
48527632 |
T |
|
| Q |
110 |
cccaatatactcttttagaatccatgagaattacgctaataaaattcaaccttgtaagatgaagctctcaaatggagtttatatagaatatatgtaatgt |
209 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48527633 |
cccaatatacacttttagaatccatgagaattacgctaataaaattcaaccttgtaagatgaagctctcaaatggagtttatatagaatatatgtaatgt |
48527732 |
T |
|
| Q |
210 |
aaagattggtaacaaattctttgatttgggtgttggttttattttgtgatggcgggaaaagcaagagagtatgttt----tagaggatggaatgaaatga |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
48527733 |
aaagattggtaacaaattctttgatttgggtgttggttttattttgtgatggcgggaaaagcaagagagtatgttttagatagaggatggaatgaaatga |
48527832 |
T |
|
| Q |
306 |
aaaggaacaagctatgagatggttgtaaaggaaagaagccttaaatcctttatttattctgtgaatagattttccaaccttcatttagaacctaattta |
404 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48527833 |
aaaggaacaagctatgagatggttgtaaaggaaagaagccttaaatcctttatttattctgtgaatagattttccaaccttcatttagaacctaattta |
48527931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 22 - 136
Target Start/End: Original strand, 7222855 - 7222969
Alignment:
| Q |
22 |
gattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattgcccaatatactc |
121 |
Q |
| |
|
|||||||||||||| || || || ||||||||||||| |||||||||||| ||||||||||||||| ||| |||| | ||||||| ||| ||||||||| |
|
|
| T |
7222855 |
gattttgtgagagcttccttgtagttaaattgacccttaacaagtatcatgtttccttggaacaaagcaagacatgttgcaatgatggccaaatatactc |
7222954 |
T |
|
| Q |
122 |
ttttagaatccatga |
136 |
Q |
| |
|
||||| |||||||| |
|
|
| T |
7222955 |
ttttattatccatga |
7222969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 126
Target Start/End: Complemental strand, 50303400 - 50303285
Alignment:
| Q |
10 |
aagaatataagggattttgtgagagcctctttataattaaattgaccctggacaagtatcatgcttccttggaacaaagtaagccatgctacaatgattg |
109 |
Q |
| |
|
||||| ||||| |||||| | |||| ||||| |||||||||||||||| |||||||||| |||||||||||| |||||||| ||| | |||||| || |
|
|
| T |
50303400 |
aagaaaataagagattttattggagcttctttgtaattaaattgacccttaacaagtatcacgcttccttggaataaagtaagtaatgttgcaatga-tg |
50303302 |
T |
|
| Q |
110 |
cccaatatactctttta |
126 |
Q |
| |
|
||||||||||| ||||| |
|
|
| T |
50303301 |
cccaatatactatttta |
50303285 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University