View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20163_low_11 (Length: 221)
Name: NF20163_low_11
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 22 - 217
Target Start/End: Complemental strand, 6283383 - 6283190
Alignment:
| Q |
22 |
tgttaaaatatctttaaaacaccggtttaatcacttgatttaattaataagaaaatataaatttacacacattaaaagaattgctccaatcaaaaaatta |
121 |
Q |
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| T |
6283383 |
tgttaaaatatctttaaaacaccggtttaatcacttgatttaattaataagaaaatataaatttacacacattaaaagaattgctccaatcaaaaaatta |
6283284 |
T |
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| Q |
122 |
tttttagctccgccatggcacctcctcaagagcggcactcctcccttagaatcttccgccacccaaactttttacaccacattcatcactctagta |
217 |
Q |
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| T |
6283283 |
tttttagctccgccatggcacctcctca--agcggcactcctcccttagaatcttccgccacccaaactttttacaccacattcatcactctagta |
6283190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 52 - 103
Target Start/End: Original strand, 8237056 - 8237107
Alignment:
| Q |
52 |
tcacttgatttaattaataagaaaatataaatttacacacattaaaagaatt |
103 |
Q |
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|||||||| |||| |||||||||||||||||| ||||||||||||||||||| |
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| T |
8237056 |
tcacttgaattaagtaataagaaaatataaatctacacacattaaaagaatt |
8237107 |
T |
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