View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20163_low_4 (Length: 521)
Name: NF20163_low_4
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 160; Significance: 5e-85; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 22 - 201
Target Start/End: Original strand, 348914 - 349092
Alignment:
| Q |
22 |
gatcgacttttacataaatgtaagtaattttgaagtggatattgagcacccatcaagaatgattgcaaacccagatcatagcgtggtaggtgaaagggat |
121 |
Q |
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| T |
348914 |
gatcgactttttcataaatgtaagtaattttgaagtgcatattgagcacccatcaagaatgattgcaa-cccagatcatagcgtggtaggtgaaagggat |
349012 |
T |
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| Q |
122 |
aagagttccgtccaagtgtgaaaaagcgactcattctacaccatgaataatgtagccattgaattggtcttatggtaggt |
201 |
Q |
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| T |
349013 |
aagatttccgtccaagtgtgaaaaagcgactcattctacaccatgaataatgtagccattgaattggtcttatggtaggt |
349092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 352 - 417
Target Start/End: Original strand, 349250 - 349315
Alignment:
| Q |
352 |
gtcaccaataataaaagaaaaagtatttttcctttgattttaccccactgaatgccataaagattt |
417 |
Q |
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| T |
349250 |
gtcaccaataataaaagaaaaagtatttttcctttgattttaccccactgaatgccataaagattt |
349315 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 470 - 502
Target Start/End: Original strand, 349371 - 349403
Alignment:
| Q |
470 |
caacttataaagtaaaatgtaatttatttacca |
502 |
Q |
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| T |
349371 |
caacttataaagtaaaatgtaatttatttacca |
349403 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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