View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20163_low_5 (Length: 510)
Name: NF20163_low_5
Description: NF20163
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20163_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 473; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 15 - 491
Target Start/End: Original strand, 8184200 - 8184676
Alignment:
| Q |
15 |
cacagaggttaatctcataataaaaccacttcactaatgatttgttcattcatacttctatctatggtgcattattcatgtcctcaatcttcactgcata |
114 |
Q |
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| T |
8184200 |
cacagaggttaatctcataataaaaccacttcactaatgatttgttcattcatacttctatctatggtgcattattcatgtcctcaatcttcactgcata |
8184299 |
T |
|
| Q |
115 |
ataacctatagaataactgaaagttaaaattgtttatgcagcaactatttctcaagggatttggtggagattacagtcatgcttactccaaagcaaattc |
214 |
Q |
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| T |
8184300 |
ataacctatagaataactgaaagttaaaattgtttatgcagcaactatttctcaagggatttggtggagattacagtcatgcttactccaaagcaaattc |
8184399 |
T |
|
| Q |
215 |
tttggctcgtgatgctattgtgaacatacgtattgtcactgctttcagtgcagaagatcgaatgtcaacccaattcgcatatgaactgaataaacctaac |
314 |
Q |
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| T |
8184400 |
tttggctcgtgatgctattgtgaacatacgtattgtcactgctttcagtgcagaagatcgaatgtcaacccaattcgcatatgaactgaataaaccttac |
8184499 |
T |
|
| Q |
315 |
aagcaggcacttctgagaggccagatatcaggttttggttacggcttgacccaactgtttgctttctgctcctatgcacttgtactttggtatgcatcca |
414 |
Q |
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| T |
8184500 |
aagcaggcacttctgagaggccagatatcaggttttggttacggcttgacccaactgtttgctttctgctcctatgcacttgtactttggtatgcatcca |
8184599 |
T |
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| Q |
415 |
tattaatcaagaagaaagagtcaactttcggagatctcatgaaatctgttgtggtcttaatcatcactgctattgca |
491 |
Q |
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| T |
8184600 |
tattaatcaagaagaaagagtcaactttcggagatctcatgaaatctgttgtggtcttaatcatcactgctattgca |
8184676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 197 - 328
Target Start/End: Original strand, 49217562 - 49217694
Alignment:
| Q |
197 |
ttactccaaagcaaattctttggctcgt-gatgctattgtgaacatacgtattgtcactgctttcagtgcagaagatcgaatgtcaacccaattcgcata |
295 |
Q |
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|||||| ||||||| ||||||||||||| || | ||||| |||||||||||||||||||||||| || |||||||| || | |||| | ||| |||| |
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| T |
49217562 |
ttactctaaagcaacttctttggctcgttgaagttattgggaacatacgtattgtcactgcttttggtacagaagattgagtatcaattcgatttgcatc |
49217661 |
T |
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| Q |
296 |
tgaactgaataaacctaacaagcaggcacttct |
328 |
Q |
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||| ||||||||| |||| |||||||||||||| |
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| T |
49217662 |
tgagctgaataaaactaataagcaggcacttct |
49217694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 49217448 - 49217488
Alignment:
| Q |
15 |
cacagaggttaatctcataataaaaccacttcactaatgat |
55 |
Q |
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|||| |||||||||||||||||||||||||||||||||||| |
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| T |
49217448 |
cacaaaggttaatctcataataaaaccacttcactaatgat |
49217488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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