View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20164_high_1 (Length: 788)
Name: NF20164_high_1
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 522; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 522; E-Value: 0
Query Start/End: Original strand, 202 - 770
Target Start/End: Original strand, 43029751 - 43030313
Alignment:
| Q |
202 |
agaatcattctgtatctacatcccaaaatggagaagaccatgattctgtcttttctccacctccttcttctccttctcccagatgcagcaaaagctgcca |
301 |
Q |
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| T |
43029751 |
agaatcattctgtatctacatcccaaaatggagaagaccatgattctgtcttttctccacctccttcttctccttctcccaaatccagcaaaagctgcca |
43029850 |
T |
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| Q |
302 |
ttggtataggcattggtgttggtgttggcattggaattggcattggcaatggcaatgatggtcccaacatcccaggatcttcaggatcatctgtgtcaaa |
401 |
Q |
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| T |
43029851 |
ttggtatagccattgg------tgttggcattggcattggcattggcaatggcaatgatggtcctaacatcccaggatcttcaggatcatctgtgtcaaa |
43029944 |
T |
|
| Q |
402 |
tctaaacaatgcctacaaagctcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttct |
501 |
Q |
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| T |
43029945 |
tctaaacaatgcctacaaagctcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttct |
43030044 |
T |
|
| Q |
502 |
tataaaggaatcttttgtgacactactagtaatactccttttgttgcaggaatagatctcaaccatgcaaatctccaaggaacacttgttaaagaactct |
601 |
Q |
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| T |
43030045 |
tataaaggaatcttttgtgacactactagtaatactccttttgttgcaggaatagatctcaaccatgcaaatctccaaggaacacttgttaaagaactct |
43030144 |
T |
|
| Q |
602 |
ctttactatctgctataacacttctccacctcaacactaataaattttcaggtacagttcctgaaacattcaaagacttcacatttcttcaagaactaga |
701 |
Q |
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| T |
43030145 |
ctttactatctgctataacacttctccacctcaacactaataaattttcaggtacagttcctgaaacattcaaagacttcatatttcttcaagaactaga |
43030244 |
T |
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| Q |
702 |
ccttagcaacaaccaactttctggttcttttcctatagttactttagacatgccaagtttaatttactt |
770 |
Q |
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| T |
43030245 |
ccttagcaacaaccaactttctggttcttttcctatagttactttagacatgccaagtttaatttactt |
43030313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 120; E-Value: 6e-61
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 43029564 - 43029691
Alignment:
| Q |
15 |
caaaggcattaacattatataaaccaaagagaaagtgacaaatgagaaaacatgacactttttaaaaccaattggccccatcaatccatcactctgtgac |
114 |
Q |
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| T |
43029564 |
caaaggcattaacattacataaaccaaagagaaagtgacaaatgagaaaacatgacacttttaaaaaccaattggccccatcaatccatcactctgtgac |
43029663 |
T |
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| Q |
115 |
tatctgtctgtcttccagcaagtgagtg |
142 |
Q |
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| T |
43029664 |
tatctgtctgtcttccagcaagtgagtg |
43029691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 8e-17; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 423 - 520
Target Start/End: Complemental strand, 34201790 - 34201693
Alignment:
| Q |
423 |
tcttcaagcttggaaatcttcaatcactgatgaccctttaaagattttagatacatgggttggtcctaatgtttgttcttataaaggaatcttttgtg |
520 |
Q |
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| T |
34201790 |
tcttcaagcatggaaatctgcaatcactgatgaccctttaaagatactagattcttggaatggttcaaatgtatgttcatataaaggaatcttctgtg |
34201693 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 655 - 772
Target Start/End: Complemental strand, 34201531 - 34201414
Alignment:
| Q |
655 |
acagttcctgaaacattcaaagacttcacatttcttcaagaactagaccttagcaacaaccaactttctggttcttttcctatagttactttagacatgc |
754 |
Q |
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| T |
34201531 |
acagttcctgaaacattcaaagatcttgtttcacttcaagagttagacctaagtaataaccaactttcaggttcttttcctttggttactttatatatgc |
34201432 |
T |
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| Q |
755 |
caagtttaatttacttgg |
772 |
Q |
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| T |
34201431 |
caagtctcatatacttgg |
34201414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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