View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20164_high_4 (Length: 537)
Name: NF20164_high_4
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_high_4 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 465; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 465; E-Value: 0
Query Start/End: Original strand, 1 - 489
Target Start/End: Original strand, 1216716 - 1217204
Alignment:
| Q |
1 |
tgggggtgttgttcctaaacccaaaaaatttattgacaccattaaagtgcaaggtacattagaattgttatctattatgtttgtttacgccacgccactg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216716 |
tgggggtgttgttcctaaacccaaaaaatttattgacaccattaaagtgcaaggtacattagaattgttatctattatgtttgtttacgccacgccactg |
1216815 |
T |
|
| Q |
101 |
taagattaggttacccaacttcgtatataagttttcctgaatcttttgagacgttcttcagtttgcagtacttgaagtcaaagtgggcctggaccctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1216816 |
taagattaggttacccaacttcgtatataagttttcctgaatcttttgagacgttcttcactttgcagtacttgaagtcaaagtgggcctggacgctcca |
1216915 |
T |
|
| Q |
201 |
actggctgcaacatgttatctatgatgacgaatataattaaaacaaaatccttgcgatctgaagttttgcaaggtatgtgaaaatgcagtctgcattata |
300 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1216916 |
actggctgcagcatgttatctatgatgacgaatataattaaaacaaaatccttgcaatctgaagttttgcaaggtatgtgaaaatgcagtctgcattata |
1217015 |
T |
|
| Q |
301 |
attaaaaggaattccatgtgatctcaagtcatgcaagatttgaacttcaaattttccatttatcttattttctgcttatgtgtatatcactagagaaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1217016 |
attaaaaggaattccatgtgatctcaagtcgtgcaagatttgaacttcaaattttccatttatcttattttctgcttatgtgtatatcactagagaaatt |
1217115 |
T |
|
| Q |
401 |
ctcatgtgttttaaagctcaaaaactcacctgaagaagatgccgttaagttgcatcctggatctcgtgacgctcatacgctgtaagttc |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1217116 |
ctcatgtgttttaaagctcaaaaactcacctgaagaagatgccgttaagttgcatcctggatctcgtgacgctcatacgctgcaagttc |
1217204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University