View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20164_low_12 (Length: 306)
Name: NF20164_low_12
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 11 - 143
Target Start/End: Original strand, 48251351 - 48251483
Alignment:
| Q |
11 |
cacagatttgaaggaaaaggcaagaagcttataaattggttcattttatttaagaatttagctctattttgaaataattttgtaaaatcgataatgttcc |
110 |
Q |
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| T |
48251351 |
cacagatttgaaggaaaaggcaagaagcttataaattggttcattttatttaagaatttagctccattttgaaataattttgtaaaatcgataatgttcc |
48251450 |
T |
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| Q |
111 |
atttccaattctaatcatgaagcaccaagacaa |
143 |
Q |
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| T |
48251451 |
atttccaattctaatcatgaagcaccaaaacaa |
48251483 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 194 - 290
Target Start/End: Original strand, 48251478 - 48251579
Alignment:
| Q |
194 |
aaacaattaatgtaattacactcaacg-----gtgttgtgtcggacaccaaacacataagtgttggtgctaatcttctctttggcagcattgatgtcttt |
288 |
Q |
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|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
48251478 |
aaacaattaatgtaattacactcatcggtgttgtgttgtgtcggacaccaaacacataagtgtcggtgctaatcttctctttggcagcattgatgtcttt |
48251577 |
T |
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| Q |
289 |
ta |
290 |
Q |
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|| |
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| T |
48251578 |
ta |
48251579 |
T |
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