View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20164_low_13 (Length: 274)
Name: NF20164_low_13
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 152; Significance: 1e-80; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 18 - 181
Target Start/End: Original strand, 36754609 - 36754772
Alignment:
| Q |
18 |
gaaatgggccattgtgatttatgagttaagaaacatgttttatgcataatatattagcagattgtaaaaagtcacagcactttttgtgtggcaaaatgcc |
117 |
Q |
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| T |
36754609 |
gaaatgggccattgtgatttatgagttaagaaacatgttttatgcataatatattagcagattgtaaaaagtcacagcactttttgtgtggcaaaatgcc |
36754708 |
T |
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| Q |
118 |
tacttgtttgtcaaatttgtttcctttactttattgctcccatttttccttactttctattata |
181 |
Q |
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| T |
36754709 |
tacttgtttgtcaaatttgtttcctttactttattgctaccttttttctttactttctattata |
36754772 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 36747209 - 36747457
Alignment:
| Q |
18 |
gaaatgggccattgtgatttatgagttaagaaacatgttttatgcataatatattagcagattgtaaaaagtcacagcactttttgtgtggcaaaatgcc |
117 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||| ||||||||| ||||||||| |
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| T |
36747209 |
gaaatgggccattgtgatttatgagttaagaaacatgctttatgcataatatattagcagattgtaacaagtcacaacacattttgtgtgacaaaatgcc |
36747308 |
T |
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| Q |
118 |
tacttgtttgtcaaatttgtttcctttactttattgctcccatttttccttactttctattatagt-----tcatcgaataagcatattgtttgtaactt |
212 |
Q |
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| T |
36747309 |
tacttgtttgtcaaatttgttttctttactttattgctaccttttttctttactttctattataatctatgttattaaatgag--tattgtttgtaactt |
36747406 |
T |
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| Q |
213 |
gctaagccatactatagaagaacttccttttctttctcagtccagattcat |
263 |
Q |
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| T |
36747407 |
actaagccataccatgaaagaactttctttactttctcattccagattcat |
36747457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 177 - 263
Target Start/End: Original strand, 36754807 - 36754892
Alignment:
| Q |
177 |
ttatagttcatcgaataagcatattgtttgtaacttgctaagccatactatagaagaacttccttttctttctcagtccagattcat |
263 |
Q |
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| T |
36754807 |
ttatagttcatcgaataagcgtattgtttgtaacttgctaagccatactatggaagaacttcctttccttt-tcagtccagattcat |
36754892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 111 - 181
Target Start/End: Original strand, 36765738 - 36765808
Alignment:
| Q |
111 |
aaatgcctacttgtttgtcaaatttgtttcctttactttattgctcccatttttccttactttctattata |
181 |
Q |
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| T |
36765738 |
aaatgcctacttgtttgtcaaatttgtttcctttactttattgttaccttttttctttactttctattata |
36765808 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 119 - 181
Target Start/End: Original strand, 36770636 - 36770698
Alignment:
| Q |
119 |
acttgtttgtcaaatttgtttcctttactttattgctcccatttttccttactttctattata |
181 |
Q |
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||||| ||||| ||||||||||||||||||||||| | || |||||| || |||||||||||| |
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| T |
36770636 |
acttggttgtcgaatttgtttcctttactttattgttgccttttttcttttctttctattata |
36770698 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 149
Target Start/End: Complemental strand, 23439105 - 23439069
Alignment:
| Q |
113 |
atgcctacttgtttgtcaaatttgtttcctttacttt |
149 |
Q |
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| T |
23439105 |
atgcctacctgtttgtcaaatttgtttcctttacttt |
23439069 |
T |
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