View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20164_low_14 (Length: 247)
Name: NF20164_low_14
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_low_14 |
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Alignment Details
Target: chr4 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 20 - 239
Target Start/End: Complemental strand, 48437715 - 48437496
Alignment:
| Q |
20 |
ctcgccaggtagttttctatctcatcaaattaacagtttagattgttttaaactaattttgtatttgtgaaatttaaactaatgactgagatnnnnnnnc |
119 |
Q |
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| T |
48437715 |
ctcgccaggtagttttctatctcatcaaattaacagtttatattgttttaaactaattttgtatttgtgaaatttaaactaatgactgagataaaaaaac |
48437616 |
T |
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| Q |
120 |
tatgtgtaaccgcgtcttttgtttatcttagatcctggtttgtctagggtctagtgtcaatttgtcatgtgacctgaaaaaacgaggatattatatatct |
219 |
Q |
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| T |
48437615 |
tatgtgtaaccgcgtcttttgtttatcttagatcctggtttgtctagggtctagtgtcaatttgtcatgtgacctgaaaaaacgaggatattatatatct |
48437516 |
T |
|
| Q |
220 |
tactaatgtttacctttgct |
239 |
Q |
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|||||||||||||||||||| |
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| T |
48437515 |
tactaatgtttacctttgct |
48437496 |
T |
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