View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20164_low_18 (Length: 205)
Name: NF20164_low_18
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_low_18 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 205
Target Start/End: Original strand, 55576061 - 55576265
Alignment:
| Q |
1 |
gtcaaattatttctaaacggttttttataaactatcctgaagagcttatctcatgttatctgcaagatatcaagatgtacgaagtgtgatggctgaaggt |
100 |
Q |
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| T |
55576061 |
gtcaaattatttctaaacggttttttataaactatcctgaagagcttatctcatgttatctgcaagatatcaagatgtacgaagtgtgatggctgaaggt |
55576160 |
T |
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| Q |
101 |
ataattgaaataagaggagtatataatctatcaaggatagagattagatggttagcaagcaaaacttaattccaacacaaccttctcaattgataaagtt |
200 |
Q |
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| T |
55576161 |
ataattgaaataagaggagtatataatctatcaaggaaagagattagatggttagcaagcaaaacttaattccaacacaaccttctcaattgataaagtt |
55576260 |
T |
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| Q |
201 |
tcacc |
205 |
Q |
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||||| |
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| T |
55576261 |
tcacc |
55576265 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 117 - 188
Target Start/End: Complemental strand, 42534396 - 42534325
Alignment:
| Q |
117 |
gagtatataatctatcaaggatagagattagatggttagcaagcaaaacttaattccaacacaaccttctca |
188 |
Q |
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| T |
42534396 |
gagtatataatcaatcaagaaaatacattagaggattagcgaacaaaacttaatcccaacacaaccttctca |
42534325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 55576026 - 55576057
Alignment:
| Q |
18 |
cggttttttataaactatcctgaagagcttat |
49 |
Q |
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| T |
55576026 |
cggttttttataaactatcctgaagagcttat |
55576057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 48 - 135
Target Start/End: Original strand, 19086491 - 19086578
Alignment:
| Q |
48 |
atctcatgttatctgcaagatatcaagatgtacgaagtgtgatggctgaaggtataattgaaataagaggagtatataatctatcaag |
135 |
Q |
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| T |
19086491 |
atctcctgttatatgcgagacatcaagatgtacaaagagcgacatgtgaaggtataattgaaataagaagagcatataatctatcaag |
19086578 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000004; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 94 - 133
Target Start/End: Original strand, 31930719 - 31930758
Alignment:
| Q |
94 |
tgaaggtataattgaaataagaggagtatataatctatca |
133 |
Q |
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| T |
31930719 |
tgaaggtataattgaaataagaggagtttataatcgatca |
31930758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 100 - 135
Target Start/End: Original strand, 49588782 - 49588817
Alignment:
| Q |
100 |
tataattgaaataagaggagtatataatctatcaag |
135 |
Q |
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| T |
49588782 |
tataattgaaataagaggagtatataatcgatcaag |
49588817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 100 - 150
Target Start/End: Complemental strand, 8048120 - 8048070
Alignment:
| Q |
100 |
tataattgaaataagaggagtatataatctatcaaggatagagattagatg |
150 |
Q |
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||||||| ||||||||||||||||||||| |||||||| | | |||||||| |
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| T |
8048120 |
tataattaaaataagaggagtatataatcgatcaaggaaaaacattagatg |
8048070 |
T |
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