View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20164_low_2 (Length: 685)
Name: NF20164_low_2
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20164_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 397 - 667
Target Start/End: Complemental strand, 52719663 - 52719393
Alignment:
| Q |
397 |
taatgttttccaaatatacccagaataaaattaaaaaattctcaaacccataaattaaccacaagtaatttgaaattgttgagtgctcatcctctcctct |
496 |
Q |
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| T |
52719663 |
taatgttttccaaatatacccagaataaaattaaaaaattctcaaacccataaattaaccacaagtaatttgaaattgttgagtgctcatcctctcctct |
52719564 |
T |
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| Q |
497 |
ttgactctcgttctcttcttcctcctccacccataaatccccaaattattgccaatatctcttctcaacataacagcacaaacccaatcattaacaatct |
596 |
Q |
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| T |
52719563 |
ttgactctcgttctcttcttcctcctccacccataaatccccaaattattgccaatatctcttctcaacttaacagcacaaacccaatcattaacaatct |
52719464 |
T |
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| Q |
597 |
cttctacctcatttttgtttgctttatcaatttatcttcttgttttcaaagcttccaagctaaactatatt |
667 |
Q |
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| T |
52719463 |
cttctacctcatttttgtttgcttgatcaatttatcttcttgttttcaaagcttccaagctaaactatatt |
52719393 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 52720185 - 52719895
Alignment:
| Q |
1 |
gtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcaatcaggcagggtcatttttatttgggttacagttgatttatggctg |
100 |
Q |
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| T |
52720185 |
gtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcgatcaggcagggtcatttttatttgggttacagttgatttatggctg |
52720086 |
T |
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| Q |
101 |
taacaaataatgtaggctggctggcacaaacttggttaacaaatggaggtttcacaagcattaagggtattaattataggctaaaatgttgttttggtcc |
200 |
Q |
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| T |
52720085 |
taacaaataatgtaggctggctggcacaaacttggttaacaaatggaggcttcacaggcatttagggtattaattataggctaaaatgttgttttggtcc |
52719986 |
T |
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| Q |
201 |
cttaacgnnnnnnnnnnnnagtatcgctttagtcaagtaataaaaaattcgtttagatctcttaagtccttctccgttatatgttttggtctc |
293 |
Q |
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| T |
52719985 |
cttaac--cttttttttttagtattgctttagtcaagtaataaaaagtccgtttagatctcttaagtccttctccgttatatgttttggtctc |
52719895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 115; E-Value: 5e-58
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 52711324 - 52711144
Alignment:
| Q |
1 |
gtaacactaattttacattttatatatgttagcagagtggaagaaagcgtctcaatcaggcagggtcat-------ttttatttgggttacagttgattt |
93 |
Q |
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| T |
52711324 |
gtaacactaattttgcattttatataggttagcagagtgtaagaaagcgtctcaatcaggcaaggtcatccatcatttttatttgggttacaattgattt |
52711225 |
T |
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| Q |
94 |
atggctgtaacaaataatgtaggctggctggcacaaacttggttaacaaatggaggtttcacaagcattaagggtattaat |
174 |
Q |
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| T |
52711224 |
atggctgtaacaaataatgtaggctggccggcacaaacttggttaacaaatggaagctccacaagcatttagggtattaat |
52711144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 294 - 334
Target Start/End: Complemental strand, 52719763 - 52719723
Alignment:
| Q |
294 |
atctattgtaagtaatagtacaccatcaccatctcatattg |
334 |
Q |
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| T |
52719763 |
atctattgtaagtaatagtacaccatcaccatctcatattg |
52719723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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