View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20164_low_3 (Length: 543)

Name: NF20164_low_3
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20164_low_3
NF20164_low_3
[»] chr6 (15 HSPs)
chr6 (43-502)||(6523130-6523587)
chr6 (64-206)||(6526403-6526545)
chr6 (52-209)||(6465361-6465518)
chr6 (286-382)||(6465191-6465287)
chr6 (64-116)||(1841894-1841946)
chr6 (274-376)||(6520785-6520887)
chr6 (109-209)||(6528221-6528321)
chr6 (307-382)||(6473288-6473363)
chr6 (64-190)||(6505527-6505653)
chr6 (301-423)||(6505297-6505419)
chr6 (273-383)||(6528050-6528160)
chr6 (89-118)||(1831843-1831872)
chr6 (1-34)||(6523681-6523714)
chr6 (301-380)||(1832028-1832107)
chr6 (25-53)||(6526565-6526593)
[»] chr1 (3 HSPs)
chr1 (1-423)||(35231375-35231794)
chr1 (2-189)||(35243016-35243203)
chr1 (301-380)||(35244264-35244343)
[»] chr7 (4 HSPs)
chr7 (140-395)||(9665386-9665641)
chr7 (277-378)||(3754043-3754144)
chr7 (277-378)||(4046094-4046195)
chr7 (307-382)||(46383274-46383350)
[»] chr4 (1 HSPs)
chr4 (140-395)||(13536410-13536665)


Alignment Details
Target: chr6 (Bit Score: 393; Significance: 0; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 43 - 502
Target Start/End: Complemental strand, 6523587 - 6523130
Alignment:
Q  43 ttgattgcaaggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttg 142  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| ||||||||    
T  6523587 ttgattgcaaggttggcttcaatagctgaagaggtttgtttccttgatgtgatttcaaaagttaaaaagtatttgaaagagatcattgagccttggcttg 6523488  T
Q  143 atggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaaggatgttctgctgactctagttctgattcttgttc 242  Q
    |||||||  ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |||     
T  6523487 atggaactttcaaataaaatggatttctatatgatcagaaatggggagatattgttaccaaacaaagatgttctgctgactctagttctgattttggttg 6523388  T
Q  243 ttagtcttattgttctcagcttcatcgctagggatatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataagctt 342  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||||||||||||    
T  6523387 --agtcttattgttctcagcttcatcgctagggatatttcctttatggtatttctgttcttgtaatgattgatccatattggggtgagaagtataagctt 6523290  T
Q  343 caagtttattcactcatggaagattttatgaacttgagcacatgttcgaacccaaatcatatgcatctaaggtgtttcgattgttataaaatgcattctt 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523289 caagtttattcactcatggaagattttatgaacttgagcacatgttcgaacccaaatcatatgcatctaaggtgtttcgattgttataaaatgcattctt 6523190  T
Q  443 gagctgtagggttaagggttacaagaattgaaaatggcagataccagaagggagctagtg 502  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6523189 gagctgtagggttaagggttacaagaattgaaaatggcagataccagaagggagctagtg 6523130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 64 - 206
Target Start/End: Complemental strand, 6526545 - 6526403
Alignment:
Q  64 atagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatg 163  Q
    ||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||| || | |||||||| |||||||||||||||  | || | |||||    
T  6526545 atagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatg 6526446  T
Q  164 aatttctatatgatcagaaatggggagatattgttaccaaaca 206  Q
     |||||| |||||| | ||||||||||||||||| ||||||||    
T  6526445 gatttctttatgataaaaaatggggagatattgtaaccaaaca 6526403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 52 - 209
Target Start/End: Complemental strand, 6465518 - 6465361
Alignment:
Q  52 aggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaa 151  Q
    ||||||||||  || |||||||||||||||||||| ||||||||| | ||| |||| |||| |||||| || |  ||||||| |||||||||||||||      
T  6465518 aggttggctttgattgctgaagaggtttgtttccttgatgtgattccgaaaattaggaagtttttgaaggaaactattgagccttggcttgatggaactt 6465419  T
Q  152 tcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaagg 209  Q
    | || | ||||| |||||| ||||||   ||||||||||  |||||||||||||||||    
T  6465418 ttaatggaaatggatttctctatgatggaaaatggggaggaattgttaccaaacaagg 6465361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 286 - 382
Target Start/End: Complemental strand, 6465287 - 6465191
Alignment:
Q  286 tatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaacttgagca 382  Q
    ||||| |||| ||| |||| |||||||||||||  |||||||  ||||||||||| ||||| ||||||||||||||  |||||||||||||||||||    
T  6465287 tatggaattgctgtgcttgcaaagattgatccaatttggggtaggaagtataagcctcaagcttattcactcatggctgattttatgaacttgagca 6465191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 64 - 116
Target Start/End: Original strand, 1841894 - 1841946
Alignment:
Q  64 atagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtattt 116  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||    
T  1841894 atagctgaagaggtttgtttccttgatgtgattccaaaagttagaaagtattt 1841946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 274 - 376
Target Start/End: Original strand, 6520785 - 6520887
Alignment:
Q  274 ggatatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatga 373  Q
    |||||||||||||||||||||| ||||||||  ||  |||||||  |||||||    |||||||||| ||||| |||| |||||||||||||||| ||||    
T  6520785 ggatatttcctttatggtattgctgttcttgctaaacttgatcccgattggggaagaaagtataagcctcaagcttatgcactcatggaagatttcatga 6520884  T
Q  374 act 376  Q
    |||    
T  6520885 act 6520887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 109 - 209
Target Start/End: Complemental strand, 6528321 - 6528221
Alignment:
Q  109 aagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaag 208  Q
    ||||||||||| ||||| ||||||| |||||||||||||||  ||||||  |||| |||||| |||||| | ||||||||||  ||| |||| |||||||    
T  6528321 aagtatttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaaatggggagggattattacaaaacaag 6528222  T
Q  209 g 209  Q
    |    
T  6528221 g 6528221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 307 - 382
Target Start/End: Original strand, 6473288 - 6473363
Alignment:
Q  307 aagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaacttgagca 382  Q
    ||||||||||||  ||||||| |||| ||||||| |||||  ||| ||||||||||||||||||||| ||||||||    
T  6473288 aagattgatccagtttggggtaagaaatataagcctcaagcctatgcactcatggaagattttatgaccttgagca 6473363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 64 - 190
Target Start/End: Complemental strand, 6505653 - 6505527
Alignment:
Q  64 atagctgaagaggtttgtttcctcgatgtgatttcaaaagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatg 163  Q
    ||||||||||||||||  ||| | ||||  |||  |||||| ||||| | |||||| || | |||||||| |||||||||||||||  | || | |||||    
T  6505653 atagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatg 6505554  T
Q  164 aatttctatatgatcagaaatggggag 190  Q
     ||||||||||||| | ||||||||||    
T  6505553 gatttctatatgataaaaaatggggag 6505527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 301 - 423
Target Start/End: Complemental strand, 6505419 - 6505297
Alignment:
Q  301 cttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaacttgagcacatgttcgaacccaaatc 400  Q
    ||||||||||| ||||||   ||||||  ||| ||||||  |||||  ||||||||  ||||||||||||||||||| |||| |   |||||| |||||     
T  6505419 cttgtaaagatcgatccaacatggggtaggaaatataaggctcaagcctattcacttgtggaagattttatgaacttaagcatagaatcgaactcaaatt 6505320  T
Q  401 atatgcatctaaggtgtttcgat 423  Q
    ||| || | ||||||||||||||    
T  6505319 atacgcgtttaaggtgtttcgat 6505297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 273 - 383
Target Start/End: Complemental strand, 6528160 - 6528050
Alignment:
Q  273 gggatatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatg 372  Q
    |||||||||  ||||||  |||| ||| ||||  ||||||||||||  |||||||  ||||||||||  |||||  |||||| |  ||||||||||||||    
T  6528160 gggatattttgtttatgcaattgctgtgcttgctaagattgatccagcttggggtaggaagtataaggctcaagcatattcattattggaagattttatg 6528061  T
Q  373 aacttgagcac 383  Q
    || ||||||||    
T  6528060 aatttgagcac 6528050  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 1831843 - 1831872
Alignment:
Q  89 atgtgatttcaaaagttagaaagtatttga 118  Q
    ||||||||||||||||||||||||||||||    
T  1831843 atgtgatttcaaaagttagaaagtatttga 1831872  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 6523681 - 6523714
Alignment:
Q  1 tcatctgcaataacaacgacttcgtcttattttt 34  Q
    ||||||||||||||||||||||||||| ||||||    
T  6523681 tcatctgcaataacaacgacttcgtctcattttt 6523714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 1832028 - 1832107
Alignment:
Q  301 cttgtaaagattgatccatattggggtgaga-agtataagcttcaagtttattcactcatggaagattttatgaacttgag 380  Q
    |||| |||||||||||||  ||||||| ||| ||||||||| |||||  ||||||||||| || |||||||||| ||||||    
T  1832028 cttgcaaagattgatccaatttggggt-agagagtataagcctcaagcctattcactcattgaggattttatgaccttgag 1832107  T

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Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 6526593 - 6526565
Alignment:
Q  25 tcttatttttatggaaaattgattgcaag 53  Q
    |||||||||||||||||||||||||||||    
T  6526593 tcttatttttatggaaaattgattgcaag 6526565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 181; Significance: 1e-97; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 423
Target Start/End: Original strand, 35231375 - 35231794
Alignment:
Q  1 tcatctgcaataacaacgacttcgtcttatttttatggaaaattgattgcaaggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaa 100  Q
    |||||||| ||||||| |||||| |||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||| ||||||||| |||    
T  35231375 tcatctgcgataacaaggacttcatcttatttttatggaaaattgattgcaaggttggctttgatagctgaagaggtttgtttccttgatgtgattccaa 35231474  T
Q  101 aagttagaaagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttac 200  Q
    ||||||  ||||||||||||||||||||||||| ||||||||||||| | ||||||||||||| |||||||||||||||| ||||| |||   |||||||    
T  35231475 aagttaagaagtatttgaaagagatcattgagccttggcttgatggagctatcaaagaaaatggatttctatatgatcaggaatggagagtagttgttac 35231574  T
Q  201 caaacaaggatgttctgctgactctagttctgattcttgttcttagtcttattgttctcagcttcatcgctagggatatttcctttatggtattgatgtt 300  Q
     |||||||||||||   |||| ||||||| ||||| | | ||| | | ||||  |||||  ||  |||  | | ||||||||||| ||||||||| | ||    
T  35231575 aaaacaaggatgtt---ctgattctagttatgattttggatctgaattttatacttctcgactatatcatttgagatatttccttgatggtattgttatt 35231671  T
Q  301 cttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaacttgagcacatgttcgaacccaaatc 400  Q
    |||||||| |||||||||| ||||||| ||||||||||   ||  | ||||||||| ||| |||| ||||||||||||||||||||||||||||| |||     
T  35231672 cttgtaaacattgatccatgttggggtaagaagtataaatgtcgggcttattcacttatgcaagagtttatgaacttgagcacatgttcgaacccgaatt 35231771  T
Q  401 atatgcatctaaggtgtttcgat 423  Q
    |||  ||| ||||||||||||||    
T  35231772 atacacatttaaggtgtttcgat 35231794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 2 - 189
Target Start/End: Original strand, 35243016 - 35243203
Alignment:
Q  2 catctgcaataacaacgacttcgtcttatttttatggaaaattgattgcaaggttggcttcaatagctgaagaggtttgtttcctcgatgtgatttcaaa 101  Q
    ||||||||||||||| |||||| |||||||||||||||||||||||||||  ||||||||  ||||||||||||||||||||| | ||||||||| ||||    
T  35243016 catctgcaataacaaggacttcatcttatttttatggaaaattgattgcatagttggctttgatagctgaagaggtttgtttctttgatgtgattccaaa 35243115  T
Q  102 agttagaaagtatttgaaagagatcattgagctttggcttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatgggga 189  Q
    |||||  ||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||| ||||||||||  ||||||||    
T  35243116 agttaagaagtatttgaaagaggtcattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatgggga 35243203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 301 - 380
Target Start/End: Original strand, 35244264 - 35244343
Alignment:
Q  301 cttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaacttgag 380  Q
    ||||| ||||||||||||  |||||||  |||||||||   |||||  |||||||||||| |||||||||||||||||||    
T  35244264 cttgttaagattgatccaacttggggtaggaagtataaatctcaagcctattcactcatgaaagattttatgaacttgag 35244343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 9665386 - 9665641
Alignment:
Q  140 ttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaaggatgttctgctgactctagttctgattcttg 239  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||||||||  ||||| ||||||||||  | | ||||||| || | |  |  || | |    
T  9665386 ttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggaggaattgtaaccaaacaagactttgctgctgattccaatgatagttttgg 9665485  T
Q  240 ttcttagtcttattgttctcagcttcatcgctagggatatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataag 339  Q
    |||| | | ||||  | | || |||||||  | |||||||||||||||||| |||| |||| | || ||| | |||||  ||||||||   |||||||||    
T  9665486 ttctgaattttataatgcccaacttcatcatttgggatatttcctttatgggattgctgttatggttaagctcgatcccgattggggtagaaagtataag 9665585  T
Q  340 cttcaagtttattcactcatggaagattttatgaacttgagcacatgttcgaaccc 395  Q
    | |||||  |||||||| |||||||||||  ||||||| ||||||||||| |||||    
T  9665586 cctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccc 9665641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 277 - 378
Target Start/End: Original strand, 3754043 - 3754144
Alignment:
Q  277 tatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaact 376  Q
    ||||| |||||||| |||| |||||||| |||||||||||||| ||||||  | |||||||| |  |||| |||||||||  || |||||||||||||||    
T  3754043 tattttctttatggaattgctgttcttgcaaagattgatccattttggggacaaaagtataaaccacaagcttattcacttttgcaagattttatgaact 3754142  T
Q  377 tg 378  Q
    ||    
T  3754143 tg 3754144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 277 - 378
Target Start/End: Complemental strand, 4046195 - 4046094
Alignment:
Q  277 tatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataagcttcaagtttattcactcatggaagattttatgaact 376  Q
    ||||| |||||||| ||||  ||||||| ||| |||||||| | ||||||  | |||||||| |  ||||||||||||||  || |||||||||||||||    
T  4046195 tattttctttatggaattggagttcttgcaaaaattgatccttcttggggacaaaagtataaaccacaagtttattcacttgtgaaagattttatgaact 4046096  T
Q  377 tg 378  Q
    ||    
T  4046095 tg 4046094  T

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Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 307 - 382
Target Start/End: Complemental strand, 46383350 - 46383274
Alignment:
Q  307 aagattgatccatattggggtgagaagtataagcttcaa-gtttattcactcatggaagattttatgaacttgagca 382  Q
    |||||||||||   |||||||  ||||||||||  |||| | ||||||||||||||||||| |||||||||||||||    
T  46383350 aagattgatcctatttggggtaggaagtataagtctcaaagcttattcactcatggaagatattatgaacttgagca 46383274  T

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Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 140 - 395
Target Start/End: Original strand, 13536410 - 13536665
Alignment:
Q  140 ttgatggaacaatcaaagaaaatgaatttctatatgatcagaaatggggagatattgttaccaaacaaggatgttctgctgactctagttctgattcttg 239  Q
    ||||||||||  |||||||||||| |||||| |||||||||||||||||||  ||||| ||||||||||  | | ||||||| || | |  |  || | |    
T  13536410 ttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggaggaattgtaaccaaacaagactttgctgctgattccaatgatagttttgg 13536509  T
Q  240 ttcttagtcttattgttctcagcttcatcgctagggatatttcctttatggtattgatgttcttgtaaagattgatccatattggggtgagaagtataag 339  Q
    |||| | | ||||  | | || |||||||  | |||||||||||||||||| |||| |||| | || ||| | |||||  ||||||||   |||||||||    
T  13536510 ttctgaattttataatgcccaacttcatcatttgggatatttcctttatgggattgctgttatggttaagctcgatcccgattggggtagaaagtataag 13536609  T
Q  340 cttcaagtttattcactcatggaagattttatgaacttgagcacatgttcgaaccc 395  Q
    | |||||  |||||||| |||||||||||  ||||||| ||||||||||| |||||    
T  13536610 cctcaagcctattcacttatggaagatttcgtgaacttaagcacatgttcaaaccc 13536665  T

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