View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20164_low_8 (Length: 347)

Name: NF20164_low_8
Description: NF20164
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20164_low_8
NF20164_low_8
[»] chr4 (17 HSPs)
chr4 (1-238)||(14356974-14357211)
chr4 (6-232)||(13027816-13028044)
chr4 (1-158)||(2651831-2651988)
chr4 (1-155)||(20570925-20571079)
chr4 (241-332)||(14356856-14356947)
chr4 (13-199)||(16324398-16324584)
chr4 (6-130)||(18774085-18774209)
chr4 (22-138)||(14902404-14902518)
chr4 (31-112)||(17812263-17812344)
chr4 (21-98)||(20577337-20577414)
chr4 (31-103)||(10249877-10249949)
chr4 (28-99)||(18394594-18394665)
chr4 (253-328)||(18776307-18776384)
chr4 (295-332)||(10250208-10250245)
chr4 (295-332)||(14902183-14902220)
chr4 (1-54)||(19889020-19889073)
chr4 (98-134)||(21350514-21350550)
[»] chr2 (18 HSPs)
chr2 (22-223)||(24157887-24158088)
chr2 (1-158)||(21846181-21846338)
chr2 (22-187)||(22383526-22383691)
chr2 (22-165)||(24440635-24440778)
chr2 (7-168)||(20568176-20568336)
chr2 (1-132)||(21911009-21911140)
chr2 (22-112)||(25918699-25918789)
chr2 (33-172)||(10896326-10896465)
chr2 (23-112)||(19320364-19320453)
chr2 (255-332)||(24158165-24158242)
chr2 (38-103)||(24844205-24844270)
chr2 (23-112)||(15668509-15668598)
chr2 (264-332)||(22383810-22383879)
chr2 (295-332)||(17966834-17966871)
chr2 (23-68)||(19643686-19643731)
chr2 (295-332)||(26618786-26618823)
chr2 (29-90)||(33705988-33706049)
chr2 (295-332)||(41121433-41121470)
[»] chr5 (18 HSPs)
chr5 (1-234)||(20969232-20969464)
chr5 (1-233)||(26119699-26119931)
chr5 (1-152)||(23589748-23589899)
chr5 (22-134)||(27057371-27057483)
chr5 (1-168)||(13692454-13692620)
chr5 (1-168)||(31588952-31589119)
chr5 (7-98)||(17262742-17262833)
chr5 (22-132)||(39798857-39798967)
chr5 (25-99)||(20237391-20237465)
chr5 (24-99)||(34637574-34637649)
chr5 (7-132)||(22585976-22586101)
chr5 (22-99)||(34638504-34638581)
chr5 (32-152)||(20567869-20567988)
chr5 (23-67)||(27276184-27276228)
chr5 (40-103)||(16607588-16607650)
chr5 (299-332)||(2152658-2152691)
chr5 (295-332)||(22403834-22403871)
chr5 (264-332)||(26119555-26119623)
[»] chr1 (17 HSPs)
chr1 (22-203)||(18129860-18130040)
chr1 (12-209)||(16870013-16870208)
chr1 (1-234)||(18516978-18517212)
chr1 (22-234)||(9346813-9347023)
chr1 (1-209)||(26279894-26280101)
chr1 (1-152)||(23054405-23054556)
chr1 (1-112)||(21683124-21683235)
chr1 (32-112)||(16478659-16478739)
chr1 (9-168)||(26703602-26703760)
chr1 (250-332)||(1578171-1578253)
chr1 (33-90)||(2819279-2819336)
chr1 (1-94)||(20109896-20109989)
chr1 (250-332)||(19717843-19717925)
chr1 (295-332)||(18615299-18615336)
chr1 (300-332)||(12613456-12613488)
chr1 (294-330)||(18209487-18209523)
chr1 (292-332)||(21617031-21617071)
[»] chr7 (22 HSPs)
chr7 (1-234)||(16307617-16307850)
chr7 (1-232)||(9064066-9064297)
chr7 (1-131)||(18047827-18047957)
chr7 (28-152)||(13172323-13172447)
chr7 (25-168)||(18361537-18361680)
chr7 (250-332)||(18047654-18047738)
chr7 (1-101)||(5035410-5035510)
chr7 (250-332)||(15088824-15088906)
chr7 (250-332)||(16307476-16307558)
chr7 (30-99)||(16105018-16105087)
chr7 (22-103)||(7487926-7488006)
chr7 (24-93)||(16472739-16472808)
chr7 (29-93)||(14114101-14114165)
chr7 (29-93)||(14423751-14423815)
chr7 (146-232)||(5035511-5035598)
chr7 (33-103)||(16412061-16412132)
chr7 (250-332)||(13730451-13730533)
chr7 (250-332)||(44467385-44467467)
chr7 (295-332)||(4494853-4494890)
chr7 (295-332)||(9065821-9065858)
chr7 (295-332)||(13880976-13881013)
chr7 (295-332)||(14304124-14304161)
[»] chr8 (13 HSPs)
chr8 (1-234)||(17916710-17916943)
chr8 (7-223)||(12193940-12194155)
chr8 (7-223)||(12438368-12438583)
chr8 (1-152)||(18558052-18558203)
chr8 (22-134)||(19505429-19505540)
chr8 (255-332)||(17916568-17916645)
chr8 (39-99)||(12541699-12541759)
chr8 (37-134)||(1208613-1208710)
chr8 (254-332)||(16189334-16189412)
chr8 (254-332)||(18120862-18120940)
chr8 (294-332)||(19707883-19707921)
chr8 (295-332)||(18773009-18773046)
chr8 (295-332)||(22461362-22461399)
[»] scaffold0522 (2 HSPs)
scaffold0522 (1-221)||(11402-11622)
scaffold0522 (1-211)||(4129-4339)
[»] chr6 (32 HSPs)
chr6 (1-210)||(24728465-24728665)
chr6 (1-210)||(24718642-24718852)
chr6 (22-234)||(13145192-13145404)
chr6 (1-209)||(18171934-18172143)
chr6 (1-211)||(23005958-23006166)
chr6 (1-211)||(23782200-23782408)
chr6 (1-211)||(16462552-16462760)
chr6 (28-168)||(24398724-24398864)
chr6 (1-223)||(23231221-23231442)
chr6 (22-134)||(31127319-31127431)
chr6 (29-203)||(10704469-10704631)
chr6 (7-112)||(26185756-26185861)
chr6 (22-138)||(19875894-19876009)
chr6 (21-172)||(17445597-17445748)
chr6 (74-210)||(14325276-14325413)
chr6 (74-210)||(14418286-14418423)
chr6 (31-103)||(12348165-12348237)
chr6 (23-99)||(18026778-18026854)
chr6 (33-152)||(7812083-7812202)
chr6 (33-103)||(25930546-25930616)
chr6 (1-59)||(17867603-17867661)
chr6 (1-59)||(17877386-17877444)
chr6 (252-324)||(10704324-10704398)
chr6 (295-332)||(12715163-12715200)
chr6 (295-332)||(15987578-15987615)
chr6 (295-332)||(17445423-17445460)
chr6 (264-332)||(17868103-17868172)
chr6 (264-332)||(17877886-17877955)
chr6 (250-283)||(23231471-23231504)
chr6 (295-332)||(24399035-24399072)
chr6 (38-99)||(25595957-25596018)
chr6 (295-332)||(26971938-26971975)
[»] scaffold0772 (1 HSPs)
scaffold0772 (1-210)||(742-952)
[»] scaffold0364 (1 HSPs)
scaffold0364 (9-234)||(10244-10470)
[»] scaffold0311 (1 HSPs)
scaffold0311 (1-178)||(20106-20283)
[»] chr3 (37 HSPs)
chr3 (1-193)||(20418269-20418461)
chr3 (22-211)||(8728907-8729095)
chr3 (22-211)||(9080794-9080982)
chr3 (1-158)||(16794246-16794403)
chr3 (23-234)||(27374832-27375048)
chr3 (28-211)||(16882353-16882537)
chr3 (6-234)||(13653958-13654185)
chr3 (7-193)||(22766464-22766645)
chr3 (30-151)||(17697676-17697797)
chr3 (6-134)||(21317433-21317561)
chr3 (1-152)||(10851846-10851997)
chr3 (7-112)||(315128-315233)
chr3 (1-138)||(14077334-14077471)
chr3 (7-99)||(16305184-16305276)
chr3 (22-168)||(3087595-3087741)
chr3 (30-134)||(19197865-19197969)
chr3 (87-210)||(7477700-7477823)
chr3 (95-198)||(7494399-7494502)
chr3 (7-93)||(14007615-14007701)
chr3 (1-138)||(4243155-4243291)
chr3 (31-136)||(13699425-13699530)
chr3 (150-209)||(50721913-50721972)
chr3 (150-209)||(50790877-50790936)
chr3 (250-332)||(16794053-16794135)
chr3 (295-332)||(10852150-10852187)
chr3 (295-332)||(19249146-19249183)
chr3 (22-93)||(11078706-11078777)
chr3 (28-95)||(15647814-15647881)
chr3 (30-169)||(17762057-17762194)
chr3 (30-169)||(19063377-19063514)
chr3 (294-332)||(8728756-8728794)
chr3 (294-332)||(9080643-9080681)
chr3 (295-332)||(12397499-12397536)
chr3 (295-332)||(14073076-14073113)
chr3 (295-332)||(20725481-20725518)
chr3 (98-134)||(50721875-50721911)
chr3 (98-134)||(50790938-50790974)
[»] scaffold0490 (1 HSPs)
scaffold0490 (1-199)||(7362-7560)
[»] scaffold1026 (2 HSPs)
scaffold1026 (6-210)||(3010-3215)
scaffold1026 (250-313)||(3275-3338)
[»] scaffold0622 (2 HSPs)
scaffold0622 (1-93)||(3383-3475)
scaffold0622 (39-103)||(2736-2800)
[»] scaffold0074 (1 HSPs)
scaffold0074 (9-136)||(31670-31797)
[»] scaffold0758 (1 HSPs)
scaffold0758 (23-166)||(4330-4472)
[»] scaffold0011 (1 HSPs)
scaffold0011 (30-137)||(59625-59731)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-134)||(112245-112375)
[»] scaffold0003 (2 HSPs)
scaffold0003 (13-93)||(416030-416110)
scaffold0003 (33-103)||(773-844)
[»] scaffold0043 (2 HSPs)
scaffold0043 (7-98)||(1813-1904)
scaffold0043 (295-332)||(25394-25431)
[»] scaffold0498 (1 HSPs)
scaffold0498 (29-99)||(3280-3350)
[»] scaffold0351 (1 HSPs)
scaffold0351 (1-112)||(9217-9325)
[»] scaffold0683 (1 HSPs)
scaffold0683 (22-93)||(435-506)
[»] scaffold0040 (1 HSPs)
scaffold0040 (1-134)||(3961-4094)
[»] scaffold0092 (1 HSPs)
scaffold0092 (28-67)||(8150-8189)
[»] scaffold0388 (1 HSPs)
scaffold0388 (30-112)||(5445-5527)
[»] scaffold0067 (1 HSPs)
scaffold0067 (23-96)||(16397-16470)
[»] scaffold0025 (1 HSPs)
scaffold0025 (295-331)||(74953-74989)
[»] scaffold0035 (2 HSPs)
scaffold0035 (297-332)||(30204-30239)
scaffold0035 (33-103)||(29867-29936)
[»] scaffold1107 (1 HSPs)
scaffold1107 (23-93)||(2340-2410)
[»] scaffold0861 (1 HSPs)
scaffold0861 (250-332)||(4637-4719)
[»] scaffold0037 (1 HSPs)
scaffold0037 (79-149)||(87021-87091)
[»] scaffold0916 (1 HSPs)
scaffold0916 (295-332)||(2328-2365)
[»] scaffold0888 (1 HSPs)
scaffold0888 (295-332)||(3824-3861)
[»] scaffold0273 (1 HSPs)
scaffold0273 (295-332)||(8218-8255)
[»] scaffold0217 (1 HSPs)
scaffold0217 (295-332)||(19418-19455)
[»] scaffold0201 (1 HSPs)
scaffold0201 (295-332)||(19432-19469)
[»] scaffold0161 (1 HSPs)
scaffold0161 (295-332)||(9828-9865)
[»] scaffold0020 (1 HSPs)
scaffold0020 (295-332)||(145253-145290)
[»] scaffold0007 (1 HSPs)
scaffold0007 (295-332)||(143474-143511)


Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 14357211 - 14356974
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  14357211 gtaccatatccttttcctgcgctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctccaggcttctattccttttgcaat 14357112  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  14357111 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatctttagactctgttgaacttcagcttttgaggctcttcagattctctgatgacg 14357012  T
Q  201 tcaacttctggcagtcagcttctaatgatcttcacact 238  Q
    ||||||||||||||||||||||||||||||||||||||    
T  14357011 tcaacttctggcagtcagcttctaatgatcttcacact 14356974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 6 - 232
Target Start/End: Original strand, 13027816 - 13028044
Alignment:
Q  6 atgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgt 105  Q
    ||||| ||||||||  ||||| ||||||||| ||||||||||||||||||||||||||||||| | |||||| ||||||| ||||||| ||||||||| |    
T  13027816 atgtcattttcctgcgctcttcagtggataagcatccaatgccttctaattcctctgaaatagccgttgctccaggcttccattccttctgcaatgatat 13027915  T
Q  106 gtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttctt-cagattctctgatgacgtca 203  Q
    |  |||||||||| ||| ||||||||||||||| ||||  ||||||||||||| |||||| || ||| ||| ||||||| |||| |||||||||||||||    
T  13027916 gcattcagaataaaaacatttaactaacttcagcttcccgtcttcagactctgatgaactccagcttctgatggttcttccagactctctgatgacgtca 13028015  T
Q  204 acttctggcagtcagcttctaatgatctt 232  Q
     ||| ||| || || ||||| ||| ||||    
T  13028016 gcttgtggtagacaacttctgatggtctt 13028044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 2651831 - 2651988
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||||||   ||||| ||||||||| ||| ||||||||||||||||||||||||||| | || ||| | ||||||||||||||||||||    
T  2651831 gtactatgtccttttcctacgctcttcagtggataagcattcaatgccttctaattcctctgaaatagtcgttactccaagcttctattccttttgcaat 2651930  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctg 158  Q
    |||||||||||||||||||||  ||||||||||| ||  ||| | |||||||||||||    
T  2651931 gatgtgtcttcagaataacaaactttaactaactgcaacttctagtcttcagactctg 2651988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 155
Target Start/End: Complemental strand, 20571079 - 20570925
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||| |||| ||||| ||||||||| |||| |||||||||||||||||||||||||| | |||||| || |||||||||||| | ||||    
T  20571079 gtactatgtcctttttctgtgctcttcagtggataagcatcaaatgccttctaattcctctgaaatagtcgttgctccagacttctattccttctacaat 20570980  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagact 155  Q
     ||||| ||||||||||||||| ||||||||||| ||| ||||| ||| ||||||    
T  20570979 tatgtgacttcagaataacaacctttaactaactgcagcttccagtctccagact 20570925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 241 - 332
Target Start/End: Complemental strand, 14356947 - 14356856
Alignment:
Q  241 aacataagcttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||    
T  14356947 aacataagcttcctttactctcttttgttctttcagaaccaatgcatgacttataatttttttctatggtcctacacacttgaacaaatatt 14356856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 16324584 - 16324398
Alignment:
Q  13 tttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    |||||||  ||||| | ||||||| ||| ||||||||||||||||||||||||||| | ||| |  ||||||| | ||||| | ||||||| ||  ||||    
T  16324584 tttcctgcgctcttcaatggataagcatacaatgccttctaattcctctgaaatagtcgttgtttcaggcttcaaatccttctacaatgatatgcattca 16324485  T
Q  113 gaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgac 199  Q
    |||||||||||||| ||||| |||||  |||| |||||||| |||| |||||| ||||||||||||||||||||| ||||| |||||    
T  16324484 gaataacaacttttgactaatttcagcatccagtcttcagattctgatgaactccaacttttgaggttcttcagactctctaatgac 16324398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 6 - 130
Target Start/End: Original strand, 18774085 - 18774209
Alignment:
Q  6 atgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgt 105  Q
    |||| |||||||||  ||||| ||||||||| |||| ||||||||||||||||||  ||||||   ||||||||||| |||||||||| |||||||||||    
T  18774085 atgttcttttcctgcgctcttaagtggataagcatctaatgccttctaattcctcctaaatagttgttgctctaggcatctattccttctgcaatgatgt 18774184  T
Q  106 gtcttcagaataacaacttttaact 130  Q
     |||||| |||||||||||||||||    
T  18774185 ttcttcataataacaacttttaact 18774209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 22 - 138
Target Start/End: Complemental strand, 14902518 - 14902404
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    |||||||||||| || ||| || ||||||||||||||||| |||||| | |||||| | ||||||||||||| ||||||||| ||||   ||||||||||    
T  14902518 ctctttagtggagaagcattcactgccttctaattcctctaaaatagtcgttgctccaagcttctattccttctgcaatgatatgtc--aagaataacaa 14902421  T
Q  122 cttttaactaacttcag 138  Q
       ||||||||||||||    
T  14902420 acattaactaacttcag 14902404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 31 - 112
Target Start/End: Complemental strand, 17812344 - 17812263
Alignment:
Q  31 ggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    |||||| ||||||||||||||||||||||||||||||| | |||||| |  |||||||| ||| |||||   ||||||||||    
T  17812344 ggataagcatccaatgccttctaattcctctgaaatagccgttgctccaaacttctatttcttctgcaaatttgtgtcttca 17812263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 21 - 98
Target Start/End: Original strand, 20577337 - 20577414
Alignment:
Q  21 actctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgca 98  Q
    |||||| | |||||||  |||||||||||||||||| ||||||||||| |||||||  ||||||||||| ||| ||||    
T  20577337 actcttcattggataagaatccaatgccttctaatttctctgaaatagccattgcttcaggcttctatttcttctgca 20577414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 10249877 - 10249949
Alignment:
Q  31 ggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    |||||| ||||||||| |||| ||||||||| || |||   ||||||||| |||||||||||| |||||||||    
T  10249877 ggataagcatccaatgacttcaaattcctcttaattagttgttgctctagacttctattccttctgcaatgat 10249949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 99
Target Start/End: Original strand, 18394594 - 18394665
Alignment:
Q  28 agtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    ||||||||| | || |||||||| ||||||||||||||| | | |||||| || |||||||||||| |||||    
T  18394594 agtggataagcctcaaatgccttataattcctctgaaatggtcgttgctccagacttctattccttatgcaa 18394665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 328
Target Start/End: Original strand, 18776307 - 18776384
Alignment:
Q  253 ctttgctcttttttgttctttcagaaccaatgcatgacttataa--tttttgtttatggtcctacacacttgaacaaa 328  Q
    ||||||||| ||||||||| ||||||| |||   |||||||||   ||||||| ||||||||| ||||||||||||||    
T  18776307 ctttgctctcttttgttctatcagaacaaatatttgacttatatattttttgtctatggtcctgcacacttgaacaaa 18776384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 10250208 - 10250245
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  10250208 aatttttgtatatggtcctgcacacttgaacaaatatt 10250245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 14902220 - 14902183
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  14902220 aatttttgtctatggtcctgcacacttgaacaaatatt 14902183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 19889073 - 19889020
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaa 54  Q
    |||| ||||||||||||||  ||||  ||||||||| |||||||||||||||||    
T  19889073 gtactatgtccttttcctgcgctctccagtggataaacatccaatgccttctaa 19889020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 21350550 - 21350514
Alignment:
Q  98 aatgatgtgtcttcagaataacaacttttaactaact 134  Q
    |||||| |||||||||||||| |||||||||||||||    
T  21350550 aatgatatgtcttcagaataataacttttaactaact 21350514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 114; Significance: 9e-58; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 114; E-Value: 9e-58
Query Start/End: Original strand, 22 - 223
Target Start/End: Original strand, 24157887 - 24158088
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||||||| ||||||||| |||||||||||||| |||||| | |||||| ||||||| ||||||| | ||||||| ||  |||||||||||||    
T  24157887 ctcttcagtggataagcatccaatgtcttctaattcctctaaaatagtcgttgctccaggcttccattccttctacaatgatatgcattcagaataacaa 24157986  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaacttctggcagtcagctt 221  Q
    ||||||||||||||||| ||||| ||||||||||||| |||||| || |||||||||||||||||||||||||||||||||| ||||| | || ||||||    
T  24157987 cttttaactaacttcagcttccagtcttcagactctgatgaactccagcttttgaggttcttcagattctctgatgacgtcagcttctagtagacagctt 24158086  T
Q  222 ct 223  Q
    ||    
T  24158087 ct 24158088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 158
Target Start/End: Original strand, 21846181 - 21846338
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||| ||  || || ||||||||  |||| ||||||||||||||||| |||||||| | |||||||||||||| ||||||| ||||||    
T  21846181 gtactatgtccttttcttgcgcttttaagtggatatgcatcaaatgccttctaattcctttgaaatagtcgttgctctaggcttccattccttctgcaat 21846280  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctg 158  Q
    ||| ||  |||||||||||||||||||||||||||||| ||||| |||||||||||||    
T  21846281 gatatgcattcagaataacaacttttaactaacttcagcttccagtcttcagactctg 21846338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 187
Target Start/End: Original strand, 22383526 - 22383691
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||| | ||||||  |||||| ||||||| | ||||||| |||||||||||||||||    
T  22383526 ctctttagtggataagcatccaatgccttctaattcctctaaaatagccgttgctcacggcttccattccttctacaatgatatgtcttcagaataacaa 22383625  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcaga 187  Q
    |||||||||||||  || || ||  |||||||||||||||| ||| | ||| ||| | ||||||||    
T  22383626 cttttaactaactctagcttgcagccttcagactctgttgacctttagcttctgatgatcttcaga 22383691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 22 - 165
Target Start/End: Complemental strand, 24440778 - 24440635
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||||||||| |||||| ||  || |||||| ||||||    
T  24440778 ctcttcagtggataaacatccaatgccttctaattcctctgaaatagcagttgctccaggcttctattccttctgcaatcatacgtgttcagattaacaa 24440679  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaact 165  Q
    ||| |||| |||||||  ||| | ||||||||||||| ||||||    
T  24440678 cttctaacaaacttcatgttctagtcttcagactctgatgaact 24440635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 7 - 168
Target Start/End: Original strand, 20568176 - 20568336
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    |||||||||||  | |||||||| |||||| |||||||||||||||||||||| | |||||| | |||||| ||||||||||||||| | ||||||||||    
T  20568176 tgtccttttccattgctctttagcggataagcatccaatgccttctaattcctataaaatagccgttgctccaggcttctattccttctacaatgatgtg 20568275  T
Q  107 tcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttca 168  Q
       ||| ||| ||||| ||||||||||||||| ||||| |||||||| |||| ||| |||||    
T  20568276 caatca-aatgacaacatttaactaacttcagcttccagtcttcagattctgatgatcttca 20568336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 21911140 - 21911009
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||||||| |||||||||||||||| |||| |||||||||||||| |||| |||| | | |||||| ||||||||||||||| |    |    
T  21911140 gtactatgtccttttcctgcactctttagtggataagcatcaaatgccttctaatttctctaaaatcgtcgttgctccaggcttctattccttctaattt 21911041  T
Q  101 gatgtgtcttcagaataacaacttttaactaa 132  Q
    |||||||||| ||||||||||  |||||||||    
T  21911040 gatgtgtctttagaataacaaactttaactaa 21911009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 25918699 - 25918789
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| || |||||||||||| |||||   ||||||||||    
T  25918699 ctctttagtggataagcatccaatgccttctaattcctctgatgtagacattgctccagacttctattccttctgcaaacttgtgtcttca 25918789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 172
Target Start/End: Complemental strand, 10896465 - 10896326
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaactaa 132  Q
    |||| |||||||||||||||||||| |||||||||| | |||||| ||| |||||||| || | |||||||||||  ||| ||  ||| |||||||||||    
T  10896465 ataagcatccaatgccttctaattcttctgaaatagccgttgctccaggattctattctttctacaatgatgtgtaatcaaaaagacagcttttaactaa 10896366  T
Q  133 cttcagtttccaatcttcagactctgttgaacttcaactt 172  Q
    |||||  ||||||||||||   |||| ||| |||||||||    
T  10896365 cttcaacttccaatcttcaacttctgatgatcttcaactt 10896326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 19320453 - 19320364
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||   ||||||||| |||||||||||| |||||| | |||||||||    
T  19320453 tcttcagtgtataagcatccaatgccttctaattcctctgaaatagctgttgctctagccttctattccttctgcaatcacgtgtcttca 19320364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 255 - 332
Target Start/End: Original strand, 24158165 - 24158242
Alignment:
Q  255 ttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||  ||||||||||||||||| || | ||| |||||||||||   ||||||||| ||||||||||||||||||    
T  24158165 ttgctctcatttgttctttcagaacctatacttgaattataattttttactatggtcctgcacacttgaacaaatatt 24158242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 38 - 103
Target Start/End: Original strand, 24844205 - 24844270
Alignment:
Q  38 catccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    |||||||||||||| || ||||||||||||| | |||||| |||||||||||| || |||||||||    
T  24844205 catccaatgccttccaactcctctgaaatagtcgttgctccaggcttctattctttctgcaatgat 24844270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 112
Target Start/End: Complemental strand, 15668598 - 15668509
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    |||| ||||||||| ||||||||||||| |||||| |||||||||| | |||||  | |||| |||||||| |||| |  ||||||||||    
T  15668598 tcttcagtggataagcatccaatgccttttaattcatctgaaatagccgttgcttcaagcttatattccttctgcagtcttgtgtcttca 15668509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 22383810 - 22383879
Alignment:
Q  264 tttgttctttcagaaccaatgcatgacttataatttttgtt-tatggtcctacacacttgaacaaatatt 332  Q
    ||||||||||||  |||||||| |||||||||| |||| |  | ||||||||||||||||||||||||||    
T  22383810 tttgttctttcattaccaatgcttgacttataaattttttactgtggtcctacacacttgaacaaatatt 22383879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 17966871 - 17966834
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  17966871 aatttttgtctatggtcctatacacttgaacaaatatt 17966834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 68
Target Start/End: Complemental strand, 19643731 - 19643686
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatag 68  Q
    |||| |||||| || |||||||||||||||||||||||| ||||||    
T  19643731 tcttcagtggacaagcatccaatgccttctaattcctctaaaatag 19643686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 26618823 - 26618786
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  26618823 aatttttgtctatggtcctgcacacttgaacaaatatt 26618786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 90
Target Start/End: Complemental strand, 33706049 - 33705988
Alignment:
Q  29 gtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattc 90  Q
    |||||||| ||||||| ||||||||||| ||||||||||| | |||||  || |||||||||    
T  33706049 gtggataagcatccaaagccttctaatttctctgaaatagtcgttgcttcagtcttctattc 33705988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 41121470 - 41121433
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||| || ||||||||||||||||||||||||||    
T  41121470 aatttttggttgtggtcctacacacttgaacaaatatt 41121433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 106; Significance: 5e-53; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 20969232 - 20969464
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||| ||||||| |||||| ||||||||| |||||||||| ||||||||||||| |||||| | ||| | |||||||||||||||| | || |    
T  20969232 gtactatgtccctttcctgcactcttaagtggataagcatccaatgctttctaattcctcttaaatagtcgttgatgtaggcttctattccttctacagt 20969331  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    |||||||||||| ||||||||  ||||||||||| ||| ||||| |||||||||| ||  |||||||| ||| ||||| ||||||||  || ||||||||    
T  20969332 gatgtgtcttcaaaataacaagctttaactaactacagcttccagtcttcagactttgaagaacttcagcttctgaggatcttcagacgct-tgatgacg 20969430  T
Q  201 tcaacttctggcagtcagcttctaatgatcttca 234  Q
    |||||||| |||||||||||||||||| ||||||    
T  20969431 tcaacttcaggcagtcagcttctaatggtcttca 20969464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 1 - 233
Target Start/End: Complemental strand, 26119931 - 26119699
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| ||||| ||  ||||| ||||||||| |||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||||||||||    
T  26119931 gtactatgtctttttcttgcgctcttcagtggataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttttgcaat 26119832  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    ||| ||  |||| |||||||||  |||||||||||||| ||||| | |||||||| || |||| | || ||||||||| |||||||| ||||||||||||    
T  26119831 gatatgcattcaaaataacaacagttaactaacttcagcttccagttttcagactatgatgaaatccagcttttgaggctcttcagactctctgatgacg 26119732  T
Q  201 tcaacttctggcagtcagcttctaatgatcttc 233  Q
    ||| ||||||| || || ||||| ||| |||||    
T  26119731 tcagcttctggtagacaacttctgatggtcttc 26119699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 23589748 - 23589899
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||| || ||||||| ||||||    
T  23589748 gtactatgtccttttcctatgctctttagtggataaccatccaatgccttctaattcctctgaaatagtcgttgctccaggcatccattccttctgcaat 23589847  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcag 152  Q
     || ||  |||||||||||||| ||||||||||||||| ||||| |||||||    
T  23589848 catatgcattcagaataacaacatttaactaacttcagcttccagtcttcag 23589899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 27057371 - 27057483
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||| ||||||||||| ||| |||||||| |||||||||||||||||||||||||||    
T  27057371 ctcttcagtggatagtcatccaatgccttctaattcctctgaaatagtcattgctctagtcttttattccttctgcaatgatgtgtcttcagaataacaa 27057470  T
Q  122 cttttaactaact 134  Q
      |||||||||||    
T  27057471 actttaactaact 27057483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 13692454 - 13692620
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||| ||| |||||  |||||||| ||| ||||| |||||||||||||| |||||| |||||||| ||||||||||||||| ||||||    
T  13692454 gtactatgtccttttc-tgtgctcttctgtggataagcattcaatgtcttctaattcctctaaaatagtcattgctcgaggcttctattccttctgcaat 13692552  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttca 168  Q
    ||||| |||||| | |||||| |||||||||||| ||| || || | ||||||||||| |||||||||    
T  13692553 gatgtatcttcatagtaacaaattttaactaactgcagctttcagtattcagactctgatgaacttca 13692620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 31589119 - 31588952
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||   |||| ||||||||  ||||||||||||| ||||||||||||| |||   |||||| ||||||||||||||| ||||||    
T  31589119 gtactatgtccttttcctgcgttcttcagtggatacgcatccaatgccttttaattcctctgaattagctgttgctccaggcttctattccttctgcaat 31589020  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttca 168  Q
    |||||||||||||||||||||  ||||| ||||| ||  ||| | ||||||||||||| ||| |||||    
T  31589019 gatgtgtcttcagaataacaaactttaattaactgcaacttctagtcttcagactctgatgatcttca 31588952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 17262833 - 17262742
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgca 98  Q
    |||||||| ||||  ||||| ||||||||| ||||||||||||||| ||||||||||||||| |||||||| ||||||||||||||||||||    
T  17262833 tgtcctttacctgcgctcttcagtggataagcatccaatgccttctcattcctctgaaatagtcattgctccaggcttctattccttttgca 17262742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 132
Target Start/End: Complemental strand, 39798967 - 39798857
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| |||| |||| |||||||||| |||||||| ||||||||||| | |||||| || ||| |||||||| |||||| ||||||||||||||||||||    
T  39798967 ctcttaagtgaataagcatccaatgctttctaatttctctgaaatagtcgttgctccagccttttattccttctgcaattatgtgtcttcagaataacaa 39798868  T
Q  122 cttttaactaa 132  Q
      |||||||||    
T  39798867 actttaactaa 39798857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 25 - 99
Target Start/End: Complemental strand, 20237465 - 20237391
Alignment:
Q  25 tttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    ||||| |||||| |||| |||||||||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  20237465 tttagaggataagcatcaaatgccttctaattcctctgaaatagtcgttgctcaaggcttctattccttttgcaa 20237391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 34637574 - 34637649
Alignment:
Q  24 ctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    ||||||||||||| ||||||||||||| |||||||||| |||||| | | |||||||| ||||||||||| |||||    
T  34637574 ctttagtggataagcatccaatgccttttaattcctctaaaatagtcgtcgctctaggattctattccttctgcaa 34637649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 7 - 132
Target Start/End: Complemental strand, 22586101 - 22585976
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    ||||||||||||   ||||||||||||||| ||| ||||||||||| | || ||| |||||| | |||||| ||||||||||||||| |||  |  ||||    
T  22586101 tgtccttttcctacgctctttagtggataagcattcaatgccttcttagtcttctaaaatagtcgttgctccaggcttctattccttctgctgtcttgtg 22586002  T
Q  107 tcttcagaataacaacttttaactaa 132  Q
    |||||| |||||| |  |||||||||    
T  22586001 tcttcaaaataaccaactttaactaa 22585976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 22 - 99
Target Start/End: Original strand, 34638504 - 34638581
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    ||||| ||||||||| |||||||||||||| |||||||||||| ||| | |||||| ||||||| ||||||| |||||    
T  34638504 ctcttcagtggataaacatccaatgccttcaaattcctctgaattagccgttgctccaggcttccattccttatgcaa 34638581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 152
Target Start/End: Original strand, 20567869 - 20567988
Alignment:
Q  32 gataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaacta 131  Q
    ||||| |||||||||||||| |||||||||||| ||| | |||||| ||| ||  ||||||| |||||| ||  | | | ||||||||||| ||||||||    
T  20567869 gataagcatccaatgccttcaaattcctctgaagtagtcgttgctccaggattgcattccttctgcaatcataag-cattagaataacaacatttaacta 20567967  T
Q  132 acttcagtttccaatcttcag 152  Q
    ||||||| ||||| |||||||    
T  20567968 acttcagcttccagtcttcag 20567988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 27276228 - 27276184
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaata 67  Q
    |||| ||||||||| ||| ||||||||||||||||||||||||||    
T  27276228 tcttcagtggataagcattcaatgccttctaattcctctgaaata 27276184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 103
Target Start/End: Original strand, 16607588 - 16607650
Alignment:
Q  40 tccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    |||||||||||| |||||||||||| ||| | |||||| ||||||||||| ||| |||||||||    
T  16607588 tccaatgccttcaaattcctctgaattagccgttgctccaggcttctatt-cttctgcaatgat 16607650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 299 - 332
Target Start/End: Complemental strand, 2152691 - 2152658
Alignment:
Q  299 tttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||| ||||||||||||||||||||||||||||    
T  2152691 tttgtctatggtcctacacacttgaacaaatatt 2152658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 22403871 - 22403834
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  22403871 aatttttgtctatggtcctccacacttgaacaaatatt 22403834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 264 - 332
Target Start/End: Complemental strand, 26119623 - 26119555
Alignment:
Q  264 tttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||| ||||| ||| | ||||||||||||||||  ||  ||||| |||||||||| |||||||    
T  26119623 tttgttctttaagaactaatacttgacttataatttttgactagtgtcctgcacacttgaaaaaatatt 26119555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 106; Significance: 5e-53; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 22 - 203
Target Start/End: Complemental strand, 18130040 - 18129860
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||| | || ||| |||||| |||||||| |||||||| ||||||||||||||||||    
T  18130040 ctcttcagtggataagcatccaataccttctaattcctctgaaatagcc-ttactccaggcttttattccttctgcaatgacgtgtcttcagaataacaa 18129942  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtca 203  Q
    ||||||||||||||||| |||||  |||||||||||| ||||||||| ||| ||||| |||||||| |||||||||||||||    
T  18129941 cttttaactaacttcagcttccagacttcagactctgatgaacttcagcttctgaggctcttcagactctctgatgacgtca 18129860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 209
Target Start/End: Original strand, 16870013 - 16870208
Alignment:
Q  12 ttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttc 111  Q
    ||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||  ||||||| ||||||  |||| || ||||||||| ||  |||    
T  16870013 ttttcctgcgctctttagtggataagcatccaatgccttctaattcctctgaaatagcaattgctccaggctttcattcattctgcaatgatatgcattc 16870112  T
Q  112 agaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaacttct 209  Q
    ||||||| ||||||||||||||||||| ||||| ||||||||||||| | |||| || ||| |||||||||||||||  |||||||||||||||||||    
T  16870113 agaataataacttttaactaacttcagcttccagtcttcagactctgataaactccagcttctgaggttcttcagat--tctgatgacgtcaacttct 16870208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 18517212 - 18516978
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||| ||  ||||| | ||  ||| |||||||||||||||||||||| |||||||| | |||||| ||||||||||||||| || |||    
T  18517212 gtactatgtccttttcttgcgctcttcaatgattaagcatccaatgccttctaattcctttgaaatagtcgttgctccaggcttctattccttctgtaat 18517113  T
Q  101 gatgtgtcttcagaataacaact-tttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgac 199  Q
    |||||||||||||||||| ||   ||||||||||| ||| ||||| ||||||||||||| ||||||||||||| ||| | |||||||| ||| |||||||    
T  18517112 gatgtgtcttcagaataaaaaaactttaactaactgcagcttccagtcttcagactctgatgaacttcaacttctgatgatcttcagactctttgatgac 18517013  T
Q  200 gtcaacttctggcagtcagcttctaatgatcttca 234  Q
    |||| |||||||||| |||||||| ||| ||||||    
T  18517012 gtcagcttctggcagccagcttctgatggtcttca 18516978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 9346813 - 9347023
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||||||||||||| |||||||||||||||||||  | |||||||| | |||||| ||||||| ||| ||| ||||||||| ||  |||||||||||||    
T  9346813 ctctttagtggataagcatccaatgccttctaatt--tttgaaatagtcgttgctccaggcttccatttcttctgcaatgatatgaattcagaataacaa 9346910  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaacttctggcagtcagctt 221  Q
    ||||||||||| | ||| ||||| ||||||||||||||||||||||| |||  |||| |||||||| ||||||| ||||||| ||||| | |||||||||    
T  9346911 cttttaactaagtccagcttccagtcttcagactctgttgaacttcagcttccgaggctcttcagactctctgacgacgtcagcttctagtagtcagctt 9347010  T
Q  222 ctaatgatcttca 234  Q
    || ||| ||||||    
T  9347011 ctgatggtcttca 9347023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 26280101 - 26279894
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||| || |||||| | ||||||| ||||||||| |||||||||| |||||||||| | |||||| ||||||||||||||| | || |    
T  26280101 gtactatgtccttttcatgcactcttcaatggataagcatccaatgacttctaattcatctgaaatagtcgttgctccaggcttctattccttctacagt 26280002  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    |||||||||||| ||||||||  |||||||||||  || ||| | ||||||||||||| ||||||||| ||| ||| | ||||||||  || ||||||||    
T  26280001 gatgtgtcttcaaaataacaaaatttaactaactgtagcttctagtcttcagactctgatgaacttcagcttctgatgatcttcagacgct-tgatgacg 26279903  T
Q  201 tcaacttct 209  Q
    ||| |||||    
T  26279902 tcagcttct 26279894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 23054405 - 23054556
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  ||||| | ||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||||||||| ||||||    
T  23054405 gtactatgtccttttcctgcgctcttcattggataaacatccaatgccttctaatttctctgaaatagtcgttgctccaggcttctattccttctgcaat 23054504  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcag 152  Q
    ||||||   ||| ||| ||||| ||||||| ||||||| ||||| |||||||    
T  23054505 gatgtgcaatcaaaatgacaacatttaactgacttcagcttccagtcttcag 23054556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 21683235 - 21683124
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  ||||| | ||||||| |||||||||||||||||||||| |||||||| | |||||  || |||||||||||| ||||||    
T  21683235 gtactatgtccttttcctgcgctcttcactggataagcatccaatgccttctaattcctttgaaatagtcgttgcttcagacttctattccttctgcaat 21683136  T
Q  101 gatgtgtcttca 112  Q
      ||||||||||    
T  21683135 cttgtgtcttca 21683124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 32 - 112
Target Start/End: Complemental strand, 16478739 - 16478659
Alignment:
Q  32 gataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    ||||| ||||||||||||||||||| ||||||||||| | |||||| ||| || |||| ||| ||||||  ||||||||||    
T  16478739 gataagcatccaatgccttctaatttctctgaaatagtcgttgctccaggtttatatttcttctgcaatcttgtgtcttca 16478659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 9 - 168
Target Start/End: Original strand, 26703602 - 26703760
Alignment:
Q  9 tccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtc 108  Q
    ||||||| |||  ||||| ||||||||| ||| ||||| ||||||||| ||||||||||| ||| | || |||||||| |||||| |||||   ||||||    
T  26703602 tcctttttctgcgctcttcagtggataagcatacaatgtcttctaatttctctgaaatagccatcgttccaggcttctgttccttctgcaaacttgtgtc 26703701  T
Q  109 ttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttca 168  Q
    |||  |||||| |  ||||||||||| ||| |||    ||||| |||||| |||||||||    
T  26703702 ttc-caataaccaactttaactaactccagcttcttgacttcaaactctgatgaacttca 26703760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 1578171 - 1578253
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||| |||||||||||||||||| |   | ||  |  ||||||||| |||||||||| |||||||||||||||||    
T  1578171 ttcctttgctctcttttgttctttcagaacctaataaagatatcaaatttttgtctatggtcctatacacttgaacaaatatt 1578253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 33 - 90
Target Start/End: Complemental strand, 2819336 - 2819279
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattc 90  Q
    |||| |||| |||||||||||||||||||||||||| | |||||| || |||||||||    
T  2819336 ataagcatctaatgccttctaattcctctgaaatagccgttgctccagtcttctattc 2819279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 20109989 - 20109896
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttt 94  Q
    |||| ||||||||||| || |||||| | | ||| |  ||||||||||||||||||||| | |||||| | |||||| | ||||||||||||||    
T  20109989 gtactatgtccttttcttgcactcttcaatagatgagtatccaatgccttctaattcctttaaaatagtcgttgctccatgcttctattccttt 20109896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 19717843 - 19717925
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaacc-aatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| || |||||||||| ||||||| |||| |||| ||  ||||||||| |||||||||  |||||||||||||||||    
T  19717843 ttcctttgccctcttttgttcttccagaacctaatg-atgatttcaaatttttgtctatggtcctgtacacttgaacaaatatt 19717925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 18615299 - 18615336
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||  |||||||||||||||||||||||||||    
T  18615299 aatttttgtccatggtcctacacacttgaacaaatatt 18615336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 300 - 332
Target Start/End: Complemental strand, 12613488 - 12613456
Alignment:
Q  300 ttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||| ||||||||||||||||||||||||||||    
T  12613488 ttgtatatggtcctacacacttgaacaaatatt 12613456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 294 - 330
Target Start/End: Original strand, 18209487 - 18209523
Alignment:
Q  294 taatttttgtttatggtcctacacacttgaacaaata 330  Q
    |||||||||||||||||||| |||||||||| |||||    
T  18209487 taatttttgtttatggtcctgcacacttgaataaata 18209523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 292 - 332
Target Start/End: Original strand, 21617031 - 21617071
Alignment:
Q  292 tataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||| | ||||||||| ||||||||||||||||||    
T  21617031 tataatttttatctatggtcctgcacacttgaacaaatatt 21617071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 102; Significance: 1e-50; HSPs: 22)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 16307850 - 16307617
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||| ||||| ||||||||| |||||||||||||||||||| ||| |||||| | |||||| ||||||| ||||||| |  |||    
T  16307850 gtactatgtccttttcctgtgctcttcagtggataagcatccaatgccttctaattcatctaaaatagtcgttgctccaggcttccattccttctataat 16307751  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    ||| |   |||||||||||||||||||||||||| ||| ||||| | ||||||||||| |||||| || ||| |||||||||| ||| ||| ||||||||    
T  16307750 gatatacattcagaataacaacttttaactaactccagcttccagttttcagactctgatgaactccagcttctgaggttctttagactctatgatgacg 16307651  T
Q  201 tcaacttctggcagtcagcttctaatgatcttca 234  Q
    ||||||| ||| ||||| ||||| ||| ||||||    
T  16307650 tcaacttttggtagtcatcttctgatggtcttca 16307617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 9064297 - 9064066
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||| ||||| |||  ||||| ||||||||| ||| |||||||||||||||||||  |||||| | |||||| ||||||| ||||||| | ||||    
T  9064297 gtactatgttctttttctgcgctcttcagtggataagcattcaatgccttctaattcctcataaatagtcgttgctccaggcttccattccttctacaat 9064198  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    ||| ||  |||||||||||||||||||||||||| ||| || || |||||||||| || |||||| || ||| | ||| |||||||| |||||||||||     
T  9064197 gatatgaattcagaataacaacttttaactaactccagctttcagtcttcagactatgatgaactccagcttctaaggctcttcagactctctgatgaca 9064098  T
Q  201 tcaacttctggcagtcagcttctaatgatctt 232  Q
    ||| ||||| ||| ||||||||| ||| ||||    
T  9064097 tcagcttcttgcattcagcttctgatggtctt 9064066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 18047957 - 18047827
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||| |||||| ||  ||||| || |||||| ||| ||||||||||||||||||||||||||  ||||||||||||||| |||||||| | ||||    
T  18047957 gtactatgttcttttcttgcgctcttcagaggataagcattcaatgccttctaattcctctgaaatatccattgctctaggcttttattccttctacaat 18047858  T
Q  101 gatgtgtcttcagaataacaacttttaacta 131  Q
    |||||||||||||||||||||| ||||||||    
T  18047857 gatgtgtcttcagaataacaacctttaacta 18047827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 152
Target Start/End: Complemental strand, 13172447 - 13172323
Alignment:
Q  28 agtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaactttta 127  Q
    ||||||||| ||||||||||||||||||| ||||||||||| | |||||| ||||||||| ||||||| ||||||||||  || | ||||||||| ||||    
T  13172447 agtggataagcatccaatgccttctaattactctgaaatagtcgttgctccaggcttctactccttttacaatgatgtgcattaaaaataacaacattta 13172348  T
Q  128 actaacttcagtttccaatcttcag 152  Q
    ||||||||||| || || |||||||    
T  13172347 actaacttcagctttcagtcttcag 13172323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 25 - 168
Target Start/End: Complemental strand, 18361680 - 18361537
Alignment:
Q  25 tttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaactt 124  Q
    |||||||||||| |||| ||||||||||||||||||||||||||   |||||  | ||||||||||||| | |||| |||||||||||  ||||| |  |    
T  18361680 tttagtggataagcatctaatgccttctaattcctctgaaatagttgttgcttcaagcttctattccttctacaatcatgtgtcttcaagataaccaact 18361581  T
Q  125 ttaactaacttcagtttccaatcttcagactctgttgaacttca 168  Q
     ||||||||| ||| |||    |||||||||||| |||||||||    
T  18361580 gtaactaactccagcttcttgacttcagactctgatgaacttca 18361537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 18047738 - 18047654
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataa--tttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||| ||| |||||||||||||||||||||   | ||||||||  ||||||| ||||||||| ||||||||||||||||||    
T  18047738 ttcctttgttctcttttgttctttcagaaccaattgttaacttataaattttttgtctatggtcctgcacacttgaacaaatatt 18047654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 101
Target Start/End: Original strand, 5035410 - 5035510
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| |||||||   ||||| ||||||||| |||||||||||||||||||  |||||||||| | ||| || |||||| |||||||| ||||||    
T  5035410 gtactatgtcattttcctacgctcttcagtggataagcatccaatgccttctaatttatctgaaataggcgttgttccaggcttttattccttctgcaat 5035509  T
Q  101 g 101  Q
    |    
T  5035510 g 5035510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 15088824 - 15088906
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||| |||||||||| ||||||| ||  | ||  || ||||||||| ||||||||| ||||||||||||||||||    
T  15088824 ttcctttgctctcttttgttcttccagaacctatttaagatgtaaaatttttgtctatggtcctccacacttgaacaaatatt 15088906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 16307558 - 16307476
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||| |||||||  ||||||||| |||||||||| | |||| |||||||||||  ||||||||| |||| |||||||||||||    
T  16307558 ttccattgctctcatttgttcttccagaaccaatacttgacatataatttttgactatggtcctgcacatttgaacaaatatt 16307476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 30 - 99
Target Start/End: Complemental strand, 16105087 - 16105018
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    ||||||| |||||||||||||||||||||| | |||||| | |||||| |||||| |||||||| |||||    
T  16105087 tggataagcatccaatgccttctaattcctataaaatagtcgttgctccaggcttatattccttctgcaa 16105018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 103
Target Start/End: Complemental strand, 7488006 - 7487926
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    ||||| ||||||||| |||||||||||||| || ||||||||| ||| |||||||| ||| || |||||||| | |||||||    
T  7488006 ctcttcagtggataagcatccaatgccttcaaaatcctctgaattagtcattgctccagg-ttttattccttctacaatgat 7487926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 24 - 93
Target Start/End: Original strand, 16472739 - 16472808
Alignment:
Q  24 ctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    ||||||||||||| |||||||||||||||||| ||| ||||| || | || ||| || ||||||||||||    
T  16472739 ctttagtggataagcatccaatgccttctaatgcctttgaaaaagtcgttactccagtcttctattcctt 16472808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 14114101 - 14114165
Alignment:
Q  29 gtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||||||| |||| ||||||||||||||| ||||||||||   |||||| || ||||||||||||    
T  14114101 gtggataagcatctaatgccttctaattcatctgaaatagtttttgctccagtcttctattcctt 14114165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 93
Target Start/End: Original strand, 14423751 - 14423815
Alignment:
Q  29 gtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||||||| |||| ||||||||||||||| ||||||||||   |||||| || ||||||||||||    
T  14423751 gtggataagcatctaatgccttctaattcatctgaaatagtttttgctccagtcttctattcctt 14423815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 146 - 232
Target Start/End: Original strand, 5035511 - 5035598
Alignment:
Q  146 tcttcagactctgttgaacttcaacttttgaggttcttcagat-tctctgatgacgtcaacttctggcagtcagcttctaatgatctt 232  Q
    |||||||||| || ||||||||| ||| ||| | |||| |||  ||||||| ||| ||||||| ||||||||||||||| ||||||||    
T  5035511 tcttcagactttgatgaacttcagcttctgatgatctttagaactctctgacgacatcaacttttggcagtcagcttctgatgatctt 5035598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 16412061 - 16412132
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttc-tattccttttgcaatgat 103  Q
    |||| |||||||||||||  |||| ||||||||||| | |||||| ||||||| |||||||| |||||||||    
T  16412061 ataagcatccaatgcctttcaatttctctgaaatagtcgttgctccaggcttcttattccttctgcaatgat 16412132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 13730533 - 13730451
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||| |||||||||| ||||||| |   |||| ||  ||||||| | |||||||||  |||||||||||||||||    
T  13730533 ttcctttgctctcttttgttcttccagaacctaataatgatttcaaatttttatctatggtcctgtacacttgaacaaatatt 13730451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Original strand, 44467385 - 44467467
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||| ||||||| |||||||||| ||||||| ||  ||||  |  ||||||||| |||||||||  |||||||||||||||||    
T  44467385 ttccattgctctattttgttcttccagaacctatttatgatgtcaaatttttgtctatggtcctgtacacttgaacaaatatt 44467467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 4494853 - 4494890
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  4494853 aatttttgtctatggtcctatacacttgaacaaatatt 4494890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 9065821 - 9065858
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  9065821 aatttttgtctatggtcctgcacacttgaacaaatatt 9065858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 13880976 - 13881013
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  13880976 aatttttgtatatggtcctgcacacttgaacaaatatt 13881013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 14304161 - 14304124
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  14304161 aatttttgtctatggtcctgcacacttgaacaaatatt 14304124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 98; Significance: 3e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 17916943 - 17916710
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| ||||||||| ||||||||||||||| | |||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| ||||||    
T  17916943 gtactatgtcattttcctgtgctctttagtggataagcttccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttctgcaat 17916844  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    ||| |   || ||||||||||||||||||||| | ||  ||||||||||||||||||| |||||| || ||| ||| | |||| ||| ||||||||||||    
T  17916843 gatttacattaagaataacaacttttaactaattccaacttccaatcttcagactctgatgaactccagcttctgacggtctttagactctctgatgacg 17916744  T
Q  201 tcaacttctggcagtcagcttctaatgatcttca 234  Q
    ||| ||||||| || || ||||| ||| ||||||    
T  17916743 tcagcttctggtagacaacttctgatggtcttca 17916710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 12193940 - 12194155
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    |||| ||||||||  ||||| | |||| || |||||||||||||| ||||| ||||||||||   ||| || ||||||||||||| | | ||||||||||    
T  12193940 tgtcattttcctgcgctcttcaatggacaagcatccaatgccttccaattcttctgaaatagttgttgttccaggcttctattccctctacaatgatgtg 12194039  T
Q  107 tcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaact 206  Q
    |||||||||||||||  |||||||||||  |||||||| |||||| |||||| ||||||||| ||| ||||| |||||| || | |||||||||||| ||    
T  12194040 tcttcagaataacaaactttaactaactgtagtttccagtcttcaaactctgatgaacttcagcttctgaggatcttcatatgc-ctgatgacgtcagct 12194138  T
Q  207 tctggcagtcagcttct 223  Q
    | |||||||||||||||    
T  12194139 tttggcagtcagcttct 12194155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 7 - 223
Target Start/End: Original strand, 12438368 - 12438583
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    |||| ||||||||  ||||| | |||| || |||||||||||||| ||||| ||||||||||   ||| || ||||||||||||| | | ||||||||||    
T  12438368 tgtcattttcctgcgctcttcaatggacaagcatccaatgccttccaattcttctgaaatagttgttgttccaggcttctattccctctacaatgatgtg 12438467  T
Q  107 tcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaact 206  Q
    |||||||||||||||  |||||||||||  |||||||| |||||| |||||| ||||||||| ||| ||||| |||||| || | |||||||||||| ||    
T  12438468 tcttcagaataacaaactttaactaactgtagtttccagtcttcaaactctgatgaacttcagcttctgaggatcttcatatgc-ctgatgacgtcagct 12438566  T
Q  207 tctggcagtcagcttct 223  Q
    | |||||||||||||||    
T  12438567 tttggcagtcagcttct 12438583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 18558052 - 18558203
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||||||| |||||| ||||||||| ||||||||||||||||||| |||||| |||| | ||||||||||||| |||||||| ||||||    
T  18558052 gtactatgtccttttcctgcactcttcagtggataaacatccaatgccttctaatttctctgatatagtcgttgctctaggcttatattccttctgcaat 18558151  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcag 152  Q
    ||||||   ||| ||  || |  ||||||||||||||| ||||| |||||||    
T  18558152 gatgtgcaatcaaaaggacgatatttaactaacttcagcttccagtcttcag 18558203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 19505540 - 19505429
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    |||| |||||| ||| ||| ||||||||||||||||||||||||||| | |||||| ||| ||||||||||| |||||   |||||||||| |||||| |    
T  19505540 ctctatagtgggtaagcattcaatgccttctaattcctctgaaatagccgttgctcgaggattctattccttctgcaaacttgtgtcttca-aataacca 19505442  T
Q  122 cttttaactaact 134  Q
      |||||||||||    
T  19505441 actttaactaact 19505429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 255 - 332
Target Start/End: Complemental strand, 17916645 - 17916568
Alignment:
Q  255 ttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||  ||||||||||||||||  || | |||||||||||||||  |||||||| | |||| |||||||||||||    
T  17916645 ttgctctcatttgttctttcagaacatatacttgacttataattttttattatggtcatgcacatttgaacaaatatt 17916568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 12541699 - 12541759
Alignment:
Q  39 atccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    ||||||||||||||||||||||| |||||| | || ||| ||||||||||| ||| |||||    
T  12541699 atccaatgccttctaattcctctaaaatagtcgtttctccaggcttctatttcttctgcaa 12541759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 37 - 134
Target Start/End: Complemental strand, 1208710 - 1208613
Alignment:
Q  37 ccatccaatgccttctaattcctctgaaatagacatt-gctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaactaact 134  Q
    ||||||||||||||| |||||||||||||||| | || || | ||||||||||||||| | |||   |||||||||| |||||| |  |||||||||||    
T  1208710 ccatccaatgccttcaaattcctctgaaatagtcgttggccccaggcttctattccttctacaaacttgtgtcttca-aataaccaaatttaactaact 1208613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 332
Target Start/End: Original strand, 16189334 - 16189412
Alignment:
Q  254 tttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||| |||||||||| ||||||| ||  | ||  |  ||||||||| |||||||||| |||||||||||||||||    
T  16189334 tttgctctcttttgttcttccagaacctatttaagatgtcaaatttttgtgtatggtcctatacacttgaacaaatatt 16189412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 254 - 332
Target Start/End: Complemental strand, 18120940 - 18120862
Alignment:
Q  254 tttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||| |||||||||| ||||||| ||  ||||  |  ||||||||| |||||||||  |||||||||||||||||    
T  18120940 tttgctctcttttgttcttccagaacctattgatgatctcaaatttttgtctatggtcctgtacacttgaacaaatatt 18120862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Original strand, 19707883 - 19707921
Alignment:
Q  294 taatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||| ||||||| ||||||||||||||||||||    
T  19707883 taatttttgtctatggtcttacacacttgaacaaatatt 19707921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 18773009 - 18773046
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  18773009 aatttttgtatatggtcctgcacacttgaacaaatatt 18773046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 22461399 - 22461362
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  22461399 aatttttgtctatggtcctgcacacttgaacaaatatt 22461362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 93; Significance: 3e-45; HSPs: 2)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11622 - 11402
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||| |||||||||  ||||| | ||||||| |||||||||| ||||||||| |||||||||| | ||| |||||||||| ||||||| | ||||    
T  11622 gtacaatgttcttttcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaatagtcgttgttctaggcttccattccttctacaat 11523  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
     || ||  |||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||    
T  11522 catatgaattcaaaataacaacttttaactaactccagcttccagtcttcagactctgttgaacttcagcttctgaggctcttcagactctttgatgacg 11423  T
Q  201 tcaacttctggcagtcagctt 221  Q
     || ||||||| || ||||||    
T  11422 ccagcttctggtagccagctt 11402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522; HSP #2
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 4339 - 4129
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||| |||||||||  ||||| | ||||||| |||||||||| ||||||||| |||||||||| | ||| |||||||||| ||||||| | ||||    
T  4339 gtacaatgttcttttcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaatagtcgttgttctaggcttccattccttctacaat 4240  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
     || ||  |||| ||||||||||||||||||||| ||| ||||| ||||||||||||||||||||||| ||| ||||| |||||||| ||| ||||||||    
T  4239 catatgaattcaaaataacaacttttaactaactccagcttccagtcttcagactctgttgaacttcagcttctgaggctcttcagactctttgatgacg 4140  T
Q  201 tcaacttctgg 211  Q
     || |||||||    
T  4139 ccagcttctgg 4129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 88; Significance: 3e-42; HSPs: 32)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 24728665 - 24728465
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||| |||||| ||||| ||| ||||||| ||||      
T  24728665 gtactatgtccttttcctgcactcttcagtggataagcatccaatgccttctaattcctctgaaatagccattgcactaggtttccattccttctgca-- 24728568  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgac 199  Q
            ||||||| || ||| ||||||||||||||| ||||| ||||||||||||| |||||| || ||| ||| ||||||| ||| |||||||||||    
T  24728567 --------ttcagaaaaagaacatttaactaacttcagcttccagtcttcagactctgatgaactccagcttctgatggttcttgagactctctgatgac 24728476  T
Q  200 gtcaacttctg 210  Q
    |||||||||||    
T  24728475 gtcaacttctg 24728465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 24718852 - 24718642
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||||||| |||||| ||||||||| |||||||||||||||||||  | |||||||| |  ||| ||||||||| ||||| |  |||||    
T  24718852 gtactatgtccttttcctgcactcttcagtggataagcatccaatgccttctaattattttgaaatagccgctgcactaggcttccattccatcagcaat 24718753  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgac 199  Q
     || ||  ||||||| || ||| ||||||||||||||| || || ||||||||||||| |||||| || ||| | | ||||||||||| |||||||||||    
T  24718752 catatgcattcagaaaaagaacatttaactaacttcagcttacagtcttcagactctgatgaactccagcttctaatggttcttcagactctctgatgac 24718653  T
Q  200 gtcaacttctg 210  Q
    |||||||||||    
T  24718652 gtcaacttctg 24718642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 22 - 234
Target Start/End: Original strand, 13145192 - 13145404
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||||||||||||| ||| |||||||||||||||| |||||||||| | ||||   ||||||||||||||| |||||||||||||||| |||  |||||    
T  13145192 ctctttagtggataagcattcaatgccttctaattcatctgaaatagtcgttgcatcaggcttctattccttctgcaatgatgtgtctttagagaaacaa 13145291  T
Q  122 cttttaactaacttcagtttcca-atcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaacttctggcagtcagct 220  Q
      ||||| ||||  ||| |||||  ||||||||||||  ||||||||| ||| ||||| |||| |||  || ||||||||||| ||||||||||||||||    
T  13145292 actttaagtaacagcagcttccagttcttcagactctaatgaacttcagcttctgaggatctttagacgct-tgatgacgtcagcttctggcagtcagct 13145390  T
Q  221 tctaatgatcttca 234  Q
    ||| ||| ||||||    
T  13145391 tctgatggtcttca 13145404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18172143 - 18171934
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||||||| | |||| | ||||||| |||  |||| ||||||||||||||||||||| | |||||||||||||| || |||| ||||||    
T  18172143 gtactatgtccttttcctgcagtcttcaatggataagcatttaatgtcttctaattcctctgaaatagtcgttgctctaggcttccataccttctgcaat 18172044  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgac 199  Q
     || ||  |||||||||||||| ||||||||||||||| || || ||| |||| |||  |||||| || ||||||| |||| |||| | |||||||||||    
T  18172043 catatgcattcagaataacaacatttaactaacttcagctttcagtctccagattctaatgaactccagcttttgatggttattcacactctctgatgac 18171944  T
Q  200 gtcaacttct 209  Q
    |||| |||||    
T  18171943 gtcagcttct 18171934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 23006166 - 23005958
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| ||||| || |||||| | ||||||| |||| |||||||||||||||||||||||||| | || ||||||||||| || |||||||||||    
T  23006166 gtactatgtctttttcttgcactcttcaatggataagcatctaatgccttctaattcctctgaaatagtcgttcctctaggcttccataccttttgcaat 23006067  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgac 199  Q
     || ||  |||||||||||||| ||||||||||||||| ||| | |||  ||||||   |||||| || ||||||| |||| || ||| ||| |||||||    
T  23006066 catatgcattcagaataacaacatttaactaacttcagcttctagtctctagactc---tgaactccagcttttgatggttatttagactctttgatgac 23005970  T
Q  200 gtcaacttctgg 211  Q
    |||| |||||||    
T  23005969 gtcagcttctgg 23005958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 211
Target Start/End: Original strand, 23782200 - 23782408
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| ||||| || |||||| | ||||||| |||| |||||||||||||||||||||||||| | || ||||||||||| || |||||||||||    
T  23782200 gtactatgtctttttcttgcactcttcaatggataagcatctaatgccttctaattcctctgaaatagtcgttcctctaggcttccataccttttgcaat 23782299  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgac 199  Q
     || ||  |||||||||||||| ||||||||||||||| ||| | |||  ||||||   |||||| || ||||||| |||| || ||| ||| |||||||    
T  23782300 catatgcattcagaataacaacatttaactaacttcagcttctagtctctagactc---tgaactccagcttttgatggttatttagactctttgatgac 23782396  T
Q  200 gtcaacttctgg 211  Q
    |||| |||||||    
T  23782397 gtcagcttctgg 23782408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 16462760 - 16462552
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  ||||  ||||||||| |||||||||||||| |||||||||||  ||| | || ||| ||||||||||||||| || |||    
T  16462760 gtactatgtccttttcctgcgctctccagtggataagcatccaatgccttcaaattcctctgatttagccgtttctccaggcttctattccttctgtaat 16462661  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    |||||   |||||||||||||  ||||||||||||||| ||||||||||||   |||| ||| |||||| || ||| | ||||||| |  || |||||||    
T  16462660 gatgtccattcagaataacaaaatttaactaacttcagcttccaatcttcaacttctgatgatcttcaaattctgatgatcttcagct--tccgatgacg 16462563  T
Q  201 tcaacttctgg 211  Q
    ||| |||||||    
T  16462562 tcagcttctgg 16462552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 168
Target Start/End: Original strand, 24398724 - 24398864
Alignment:
Q  28 agtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaactttta 127  Q
    ||||||||| |||||||||||||||||||||| | |||||| | |||||| |||||||||| |||| |||||||||||||||| ||||||||||  ||||    
T  24398724 agtggataagcatccaatgccttctaattcctttaaaatagtcgttgctccaggcttctataccttctgcaatgatgtgtcttgagaataacaaacttta 24398823  T
Q  128 actaacttcagtttccaatcttcagactctgttgaacttca 168  Q
    ||||||| ||| |||  | || ||||||||  |||||||||    
T  24398824 actaactgcagcttcttaactacagactctaatgaacttca 24398864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 23231221 - 23231442
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  |||||  |||||||| ||||||||||||||||||| ||||||||||   ||||||  |||||| ||||| || | |  |    
T  23231221 gtactatgtccttttcctgcgctcttccgtggataagcatccaatgccttctaatttctctgaaatatcaattgcttcaggcttttattcattctacggt 23231320  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacg 200  Q
    ||| |||||| ||||||||||  ||||||||||| ||  |   | ||||||||||||| ||||||||| ||| | ||  ||||||||  || ||||||||    
T  23231321 gatatgtctttagaataacaaactttaactaactacaactattagtcttcagactctgatgaacttcagcttcttagaatcttcagacgct-tgatgacg 23231419  T
Q  201 tcaacttctggcagtcagcttct 223  Q
    ||| |||||||||||||||||||    
T  23231420 tcagcttctggcagtcagcttct 23231442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 31127431 - 31127319
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||| ||| ||||||||||||| |||||||||||||||| || ||| || |||||||||||||||||||||| ||||||||||| |||||| |    
T  31127431 ctcttcagtggttaagcatccaatgccttataattcctctgaaatatacgttgttccaggcttctattccttttgcaatcatgtgtcttcaaaataacca 31127332  T
Q  122 cttttaactaact 134  Q
      |||||||||||    
T  31127331 actttaactaact 31127319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 29 - 203
Target Start/End: Complemental strand, 10704631 - 10704469
Alignment:
Q  29 gtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaa 128  Q
    |||||||| ||| ||||| |||||||||||| | |||||| | ||||||||||||||||||||||            ||||||| ||||||||  |||||    
T  10704631 gtggataagcattcaatgtcttctaattcctttaaaatagtcgttgctctaggcttctattcctt------------gtcttcaaaataacaaactttaa 10704544  T
Q  129 ctaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtca 203  Q
    |||||| ||| ||||| |||||||||| || ||||||||| ||| || || |||||||| |||||||||||||||    
T  10704543 ctaactgcagcttccagtcttcagactttgatgaacttcagcttctggggatcttcagactctctgatgacgtca 10704469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 26185756 - 26185861
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    ||||||||| ||| |||||||||||||||| |||| ||||||||||||||| |||||||||| | ||| || ||  |||||||||||||| ||| | |||    
T  26185756 tgtcctttttctgcactctttagtggataagcatctaatgccttctaattcatctgaaatagccgttgttccagatttctattccttttgtaatcacgtg 26185855  T
Q  107 tcttca 112  Q
    ||||||    
T  26185856 tcttca 26185861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 22 - 138
Target Start/End: Original strand, 19875894 - 19876009
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||||||||||||| |||||| |||||| ||||||||||||||||| |||| ||| || ||||  |||||| |||||| || || | | ||||||||||    
T  19875894 ctctttagtggataagcatccattgccttgtaattcctctgaaatagccattactccagacttccgttccttctgcaatcatatg-cattagaataacaa 19875992  T
Q  122 cttttaactaacttcag 138  Q
    | |||||||||||||||    
T  19875993 catttaactaacttcag 19876009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 21 - 172
Target Start/End: Complemental strand, 17445748 - 17445597
Alignment:
Q  21 actctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataaca 120  Q
    |||||| || |||| | ||| ||||| ||||||||||||||||||||| | |||||| |||||   ||||||| | |||||||| |  |||| |||||||    
T  17445748 actcttcagcggatcagcattcaatgtcttctaattcctctgaaatagtcgttgctccaggctctcattccttctccaatgatgagcattcaaaataaca 17445649  T
Q  121 acttttaactaacttcagtttccaatcttcagactctgttgaacttcaactt 172  Q
    || ||||||||||||||| ||||| |||| ||  |||| ||||| |||||||    
T  17445648 acatttaactaacttcagcttccagtctttagcttctgatgaacctcaactt 17445597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 14325413 - 14325276
Alignment:
Q  74 gctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttt 173  Q
    |||| ||||||| |||| || |||||| || ||| |||||||||||||| ||||||||||||||| ||| | |||||||||| || ||||||| | |||     
T  14325413 gctccaggcttccattcattctgcaatcatatgtattcagaataacaacatttaactaacttcagcttctagtcttcagactttgatgaactttagcttc 14325314  T
Q  174 tga-ggttcttcagattctctgatgacgtcaacttctg 210  Q
    ||| ||||||| ||| | |||||||| |||| ||||||    
T  14325313 tgatggttctttagactttctgatgatgtcagcttctg 14325276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 74 - 210
Target Start/End: Complemental strand, 14418423 - 14418286
Alignment:
Q  74 gctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttt 173  Q
    |||| ||||||| |||| || |||||| || ||| |||||||||||||| ||||||||||||||| ||| | |||||||||| || ||||||| | |||     
T  14418423 gctccaggcttccattcattctgcaatcatatgtattcagaataacaacatttaactaacttcagcttctagtcttcagactttgatgaactttagcttc 14418324  T
Q  174 tga-ggttcttcagattctctgatgacgtcaacttctg 210  Q
    ||| ||||||| ||| | |||||||| |||| ||||||    
T  14418323 tgatggttctttagactttctgatgatgtcagcttctg 14418286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 31 - 103
Target Start/End: Original strand, 12348165 - 12348237
Alignment:
Q  31 ggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    |||||| ||||||||| |||| ||||||| |||| ||| |||||||| |||||||||||||||||||||||||    
T  12348165 ggataagcatccaatgacttcaaattcctatgaattagccattgctccaggcttctattccttttgcaatgat 12348237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 18026854 - 18026778
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    |||| ||||||||| |||||||||||||||||||||||||||||||   |||||| ||||||||| ||||| |||||    
T  18026854 tcttcagtggataagcatccaatgccttctaattcctctgaaatagttgttgctccaggcttctactccttctgcaa 18026778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 33 - 152
Target Start/End: Original strand, 7812083 - 7812202
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaactaa 132  Q
    |||| |||||||||||||  |||||||||||| ||| | |||||| | ||||||||||||| |||| | |||     ||||||| ||||| |||||||||    
T  7812083 ataagcatccaatgcctttaaattcctctgaattagtcgttgctcaaagcttctattccttctgcatttatgcaaaatcagaatgacaacatttaactaa 7812182  T
Q  133 cttcagtttccaatcttcag 152  Q
    ||| |||||||| |||||||    
T  7812183 ctttagtttccattcttcag 7812202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 25930546 - 25930616
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    |||| ||||||||| |||| |||||||||||| ||| | |||||| ||||||||||||||| |||||||||    
T  25930546 ataagcatccaatgacttcaaattcctctgaattagccgttgctccaggcttctattccttctgcaatgat 25930616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17867603 - 17867661
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcct 59  Q
    |||| ||||||||| ||||  ||||| ||||||||| ||||||||||||||||||||||    
T  17867603 gtactatgtcctttccctgcgctcttcagtggataagcatccaatgccttctaattcct 17867661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 17877386 - 17877444
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcct 59  Q
    |||| ||||||||| ||||  ||||| ||||||||| ||||||||||||||||||||||    
T  17877386 gtactatgtcctttccctgcgctcttcagtggataagcatccaatgccttctaattcct 17877444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 324
Target Start/End: Complemental strand, 10704398 - 10704324
Alignment:
Q  252 cctttgctcttttttgttctttcagaaccaatgcatgacttataa--tttttgtttatggtcctacacacttgaa 324  Q
    |||||||||| ||||||||||| ||||||||||  |||||| |||  ||||| | ||||||||| ||||||||||    
T  10704398 cctttgctctcttttgttctttaagaaccaatgattgacttgtaatttttttatctatggtcctgcacacttgaa 10704324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 12715200 - 12715163
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||||||||||  |||||||||||||||||    
T  12715200 aatttttgtttatggtcctgtacacttgaacaaatatt 12715163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 15987578 - 15987615
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  15987578 aatttttgtatatggtcctgcacacttgaacaaatatt 15987615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 17445460 - 17445423
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  17445460 aatttttgtctatggtccttcacacttgaacaaatatt 17445423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 17868103 - 17868172
Alignment:
Q  264 tttgttctttcagaaccaatgcatgacttataatttttgtt-tatggtcctacacacttgaacaaatatt 332  Q
    |||||||| | ||||||||||| || |||||||||||| ||  ||||| || ||||||||||||||||||    
T  17868103 tttgttctatgagaaccaatgcttggcttataattttttttccatggttctgcacacttgaacaaatatt 17868172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 264 - 332
Target Start/End: Original strand, 17877886 - 17877955
Alignment:
Q  264 tttgttctttcagaaccaatgcatgacttataatttttgtt-tatggtcctacacacttgaacaaatatt 332  Q
    |||||||| | ||||||||||| || |||||||||||| ||  ||||| || ||||||||||||||||||    
T  17877886 tttgttctatgagaaccaatgcttggcttataattttttttccatggttctgcacacttgaacaaatatt 17877955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Original strand, 23231471 - 23231504
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaat 283  Q
    |||||||||||| |||||||||||||||||||||    
T  23231471 ttcctttgctctcttttgttctttcagaaccaat 23231504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 24399035 - 24399072
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  24399035 aatttttgtctatggtcctgcacacttgaacaaatatt 24399072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 38 - 99
Target Start/End: Original strand, 25595957 - 25596018
Alignment:
Q  38 catccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    |||| ||||| ||||||||||| |||||||| | |||||| || |||||||||||| |||||    
T  25595957 catcaaatgcattctaattcctttgaaatagtcgttgctccagacttctattccttatgcaa 25596018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 26971975 - 26971938
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||||||||||  |||||||||||||||||    
T  26971975 aatttttgtttatggtcctgtacacttgaacaaatatt 26971938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0772 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0772
Description:

Target: scaffold0772; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 1 - 210
Target Start/End: Complemental strand, 952 - 742
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||| ||||||| ||| ||||| ||||||||| ||||||||| ||||||| |||||||||||||   |||||| | ||||| ||||||| ||||||    
T  952 gtactatgcccttttcatgtgctcttcagtggataagcatccaatgtcttctaaatcctctgaaatagttgttgctccaagcttccattccttatgcaat 853  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgac 199  Q
    ||| ||  | |||||||||||| ||||||||||||||| ||||| ||||||||||||  |||||| |||||| ||| ||||||||| | |||||||||||    
T  852 gatatgcatacagaataacaacatttaactaacttcagcttccagtcttcagactcttatgaactccaacttctgatggttcttcaaactctctgatgac 753  T
Q  200 gtcaacttctg 210  Q
    |||| ||||||    
T  752 gtcagcttctg 742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0364 (Bit Score: 87; Significance: 1e-41; HSPs: 1)
Name: scaffold0364
Description:

Target: scaffold0364; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 9 - 234
Target Start/End: Complemental strand, 10470 - 10244
Alignment:
Q  9 tccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtc 108  Q
    |||||||||||  || || ||||||||| ||||||||||||||||||| ||||||||||| | ||||||| |||||  |||||||  |||||||| ||      
T  10470 tccttttcctgcgcttttcagtggataaacatccaatgccttctaatttctctgaaatagtcgttgctctcggcttgcattccttccgcaatgatatgca 10371  T
Q  109 ttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgacgtcaactt 207  Q
    || ||||||||||| ||||||||||||||| ||||| |||| |||||||| |||||| || ||| | | ||||||||||| |||| |||||||||| |||    
T  10370 ttaagaataacaacatttaactaacttcagcttccagtctttagactctgatgaactccagcttctaatggttcttcagactctccgatgacgtcagctt 10271  T
Q  208 ctggcagtcagcttctaatgatcttca 234  Q
    |||| || |||||||| ||| ||||||    
T  10270 ctggtagacagcttctgatggtcttca 10244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 20106 - 20283
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  ||||| | ||||||| |||||||||| ||||||||| |||||||||| | |||||||||||||| ||||||| ||||||    
T  20106 gtactatgtccttttcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaatagtcgttgctctaggcttccattccttctgcaat 20205  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgagg 178  Q
     || ||  |||| ||||||||||||||||||||| ||| ||||| |||||||||||| |||||||||| ||| |||||    
T  20206 catatgagttcaaaataacaacttttaactaactccagcttccagtcttcagactctattgaacttcagcttctgagg 20283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 37)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 193
Target Start/End: Original strand, 20418269 - 20418461
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| ||||| ||  ||||| || ||||||  |||||||||||||||||||||||||||||| | |||||| || |||| ||| ||| | ||||    
T  20418269 gtactatgtcattttcttgcgctcttcagaggataagtatccaatgccttctaattcctctgaaatagtcgttgctccagacttccatttcttctacaat 20418368  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctct 193  Q
     |||||| |||||||||||||||||||||||||| ||| |||||||||||||| |||| ||||||||| ||| ||||| |||||||| |||||    
T  20418369 catgtgtattcagaataacaacttttaactaactccagcttccaatcttcagaatctgatgaacttcagcttctgaggctcttcagactctct 20418461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 8729095 - 8728907
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| |||||| || ||  |||| ||||||||    
T  8729095 ctcttcagtggataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttctgcaatcatatgcattcaaaataacaa 8728996  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgacgtcaacttctgg 211  Q
    | |||||| |||||||||||||| ||||||||||||| ||||||||| ||| ||| |||||||||||  ||  |||||||||| |||||||    
T  8728995 catttaacaaacttcagtttccagtcttcagactctgatgaacttcagcttctgatggttcttcaga--ctaagatgacgtcagcttctgg 8728907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 22 - 211
Target Start/End: Complemental strand, 9080982 - 9080794
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||| ||||||||| |||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| |||||| || ||  |||| ||||||||    
T  9080982 ctcttcagtggataagcatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttctgcaatcatatgcattcaaaataacaa 9080883  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgacgtcaacttctgg 211  Q
    | |||||| |||||||||||||| ||||||||||||| ||||||||| ||| ||| |||||||||||  ||  |||||||||| |||||||    
T  9080882 catttaacaaacttcagtttccagtcttcagactctgatgaacttcagcttctgatggttcttcaga--ctaagatgacgtcagcttctgg 9080794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 1 - 158
Target Start/End: Complemental strand, 16794403 - 16794246
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||| |||  ||||| | ||||||| |||||||||||| |||||||||||||||||| |||||||  ||||||| ||||||| ||||||    
T  16794403 gtactatgtcctttttctgcgctcttcaatggataagcatccaatgcctcctaattcctctgaaatagtcattgcttcaggcttccattccttctgcaat 16794304  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctg 158  Q
     || ||  |||||||||||||||||||||||||||||| |||||  ||||||||||||    
T  16794303 catatgcattcagaataacaacttttaactaacttcagcttccaggcttcagactctg 16794246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 27374832 - 27375048
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcaga----ataa 118  Q
    ||||||||||| || |||||||||||||||||||||||| ||| |  | |||||||||||||| || |||| | |||||||  | |||||||    ||||    
T  27374832 tctttagtggagaagcatccaatgccttctaattcctctaaaacactcgttgctctaggcttccataccttctacaatgatcagacttcagaatatataa 27374931  T
Q  119 caacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgacgtcaacttctggcagtca 217  Q
    ||||||| |||| | ||||| |||||||||||| ||| || ||||||  | ||| ||| ||||||||||| ||||||||||||||||||||||  |||||    
T  27374932 caactttgaactgatttcagcttccaatcttcatactttgatgaactctagcttctgatggttcttcagactctctgatgacgtcaacttctgatagtca 27375031  T
Q  218 gcttctaatgatcttca 234  Q
    |||||| ||| ||||||    
T  27375032 gcttctgatggtcttca 27375048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 28 - 211
Target Start/End: Original strand, 16882353 - 16882537
Alignment:
Q  28 agtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaactttta 127  Q
    ||||||||| ||||||||||||| |||||||||||||||||   ||| |  ||||||| ||||||| |||||| || |   |||||||||||||||||||    
T  16882353 agtggataagcatccaatgccttttaattcctctgaaatagctgttgttgcaggcttccattccttctgcaatcatatccattcagaataacaactttta 16882452  T
Q  128 actaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgacgtcaacttctgg 211  Q
    || ||||| || ||||| |||||| |||||| | || || ||||| ||| ||||||||||| ||||||||||| ||| |||||||    
T  16882453 acaaactttagcttccagtcttcaaactctgatcaattttaacttctgatggttcttcagactctctgatgacatcagcttctgg 16882537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 6 - 234
Target Start/End: Original strand, 13653958 - 13654185
Alignment:
Q  6 atgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgt 105  Q
    |||||||||| ||||  |||| |||||||||  ||| ||||||||||||||||||||||||||   |||||| ||||||||||||| | |||||||||||    
T  13653958 atgtcctttttctgtgttcttcagtggataataatctaatgccttctaattcctctgaaatagttgttgctccaggcttctattcc-tctgcaatgatgt 13654056  T
Q  106 gtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaa- 204  Q
    ||||||||||||||||  || |||||||| ||  |||    |||||||||||| ||  ||||||  | ||| | ||||||||  || ||||||||||||     
T  13654057 gtcttcagaataacaaaattcaactaactgcaacttcttgacttcagactctgatgtgcttcaaactctgatggtcttcagacgct-tgatgacgtcaag 13654155  T
Q  205 cttctggcagtcagcttctaatgatcttca 234  Q
      ||||||||||||||||| ||| ||||||    
T  13654156 actctggcagtcagcttctgatggtcttca 13654185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 7 - 193
Target Start/End: Complemental strand, 22766645 - 22766464
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    |||||||||||||  ||||| ||||||||| |||||||||||||| |||||||||||| ||| | |||||||||||||| ||||||| |||||| ||  |    
T  22766645 tgtccttttcctgcgctcttcagtggataagcatccaatgccttcaaattcctctgaattagccgttgctctaggcttccattccttctgcaatcataag 22766546  T
Q  107 tcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctct 193  Q
      |||||||||||||| || ||||||    || ||||| |||||||||| || ||||||||| ||| ||| | ||||||||| ||||    
T  22766545 cattcagaataacaac-ttaaactaa----agcttccagtcttcagactttgatgaacttcagcttctgatgatcttcagatgctct 22766464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 30 - 151
Target Start/End: Original strand, 17697676 - 17697797
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaac 129  Q
    ||||||| |||||||||||||| |||||||||||| |||  ||||||| ||||||||||||||| |||||||||| |   | ||||| ||||| ||||||    
T  17697676 tggataagcatccaatgccttcaaattcctctgaattagctattgctccaggcttctattccttctgcaatgatgcgcaattagaatgacaacatttaac 17697775  T
Q  130 taacttcagtttccaatcttca 151  Q
    ||||||||| ||||| ||||||    
T  17697776 taacttcagcttccagtcttca 17697797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 6 - 134
Target Start/End: Original strand, 21317433 - 21317561
Alignment:
Q  6 atgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgt 105  Q
    ||||||||||||||  ||||| || |||||| |||| |||||||| |||||| ||| |||||| | |||||||||||||||||||||| |||||| ||||    
T  21317433 atgtccttttcctgcgctcttcagaggataagcatcaaatgccttataattcatctaaaatagtcgttgctctaggcttctattccttctgcaatcatgt 21317532  T
Q  106 gtcttcagaataacaacttttaactaact 134  Q
    ||| ||| | ||||||  |||||||||||    
T  21317533 gtcatcaaattaacaaactttaactaact 21317561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 152
Target Start/End: Original strand, 10851846 - 10851997
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||| ||| ||||| |||| |||| |||||||||| |||||| |||| |||||||| | || ||| | |||| |||||||| ||||||    
T  10851846 gtactatgtccttttcttgtgctcttcagtgaataagcatccaatgctttctaactcctttgaaatagccgttactccaagcttttattccttctgcaat 10851945  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcag 152  Q
    ||||||   ||| ||| ||||| ||||||||||||||  |||||||||||||    
T  10851946 gatgtgcaatcaaaatgacaacatttaactaacttcaacttccaatcttcag 10851997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 7 - 112
Target Start/End: Original strand, 315128 - 315233
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtg 106  Q
    |||||||||| ||  ||||| ||||||||| ||| ||||||||||||||||||||||||||| | |||||| ||| || |||||||  |||||| |||||    
T  315128 tgtccttttcatgcgctcttcagtggataagcattcaatgccttctaattcctctgaaatagccgttgctccaggtttttattcctcctgcaatcatgtg 315227  T
Q  107 tcttca 112  Q
    ||||||    
T  315228 tcttca 315233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 14077471 - 14077334
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||| ||  ||||| ||||||||| ||||||||| ||||||||||||||||||||  ||||| || |||||  ||||  || ||||||    
T  14077471 gtactatgtccttttcttgcgctcttcagtggataagcatccaatgtcttctaattcctctgaaatatccattgatccaggctcttattggttctgcaat 14077372  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcag 138  Q
    |||||||  ||| ||| ||||| | |||||||||||||    
T  14077371 gatgtgtaatcaaaatgacaacatataactaacttcag 14077334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 16305276 - 16305184
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    |||||||||||||  |||||||||| ||||  ||||||||||||||| |||||||||||||  |||||||  ||||||||||||||| |||||    
T  16305276 tgtccttttcctgcgctctttagtgcataagtatccaatgccttctatttcctctgaaatattcattgcttcaggcttctattccttctgcaa 16305184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 22 - 168
Target Start/End: Original strand, 3087595 - 3087741
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaa 121  Q
    ||||||||||||||| ||| |||||  ||||||||||||||||| ||   |||||  ||||||||||||||| |||||| ||||||||||  |||||| |    
T  3087595 ctctttagtggataagcattcaatgtattctaattcctctgaaagagttgttgcttcaggcttctattccttctgcaatcatgtgtcttcgaaataacca 3087694  T
Q  122 cttttaactaacttcagtttccaatcttcagactctgttgaacttca 168  Q
      |||||||||||| || |||    | |||||||||| |||||||||    
T  3087695 actttaactaacttgagcttcttgacatcagactctgatgaacttca 3087741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 134
Target Start/End: Complemental strand, 19197969 - 19197865
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaac 129  Q
    ||||||| |||||||||||||| |||||||||||| ||| | |||||| ||||||| ||||||| |||||| || ||  |||||||||||||  |||| |    
T  19197969 tggataatcatccaatgccttcaaattcctctgaagtagtcgttgctccaggcttccattccttctgcaatcatatgcattcagaataacaaaatttagc 19197870  T
Q  130 taact 134  Q
    |||||    
T  19197869 taact 19197865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 87 - 210
Target Start/End: Original strand, 7477700 - 7477823
Alignment:
Q  87 attccttttgcaatgatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcag 186  Q
    ||||||| ||||||||| ||  |||||||||||||  |||||||||||  || ||||| |||||| |||||  ||||||||| ||| ||| | |||||||    
T  7477700 attccttctgcaatgatatgaattcagaataacaatgtttaactaactctagcttccagtcttcatactctaatgaacttcagcttctgatgctcttcag 7477799  T
Q  187 attctctgatgacgtcaacttctg 210  Q
    | |||||||||| |||| ||||||    
T  7477800 actctctgatgatgtcagcttctg 7477823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 7494399 - 7494502
Alignment:
Q  95 tgcaatgatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctg 194  Q
    ||||||||| ||  |||| |||| |||| ||||||||||| ||| |||||||||||| |||||| ||||||||| ||| ||| | |||||||| ||||||    
T  7494399 tgcaatgatatgaattcataatagcaacgtttaactaactccagcttccaatcttcatactctgatgaacttcagcttctgatgctcttcagactctctg 7494498  T
Q  195 atga 198  Q
    ||||    
T  7494499 atga 7494502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 7 - 93
Target Start/End: Original strand, 14007615 - 14007701
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||||||||||||  ||||||||||||||| |||||||||||||| ||||||||| || ||| ||||| |  ||||||| |||||||    
T  14007615 tgtccttttcctgcgctctttagtggataaacatccaatgccttcaaattcctctaaattagccattgttgcaggcttccattcctt 14007701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 4243291 - 4243155
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||| ||||| ||  ||||| ||||||||| ||| ||||||||| ||||||||||||||||| | |||||| || ||||  || ||| ||||||    
T  4243291 gtactatgtcattttcttgcgctcttcagtggataagcattcaatgcctt-taattcctctgaaatagtcgttgctccagacttccttttcttatgcaat 4243193  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcag 138  Q
     ||  || |||||||||||||||| |||| ||||||||    
T  4243192 cataagtattcagaataacaacttctaacaaacttcag 4243155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 31 - 136
Target Start/End: Original strand, 13699425 - 13699530
Alignment:
Q  31 ggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaact 130  Q
    |||||| ||||||||||||||| |||||||||||||||   |||||| || ||||| ||| || |||||| ||||||||||| |||||| |   ||||||    
T  13699425 ggataagcatccaatgccttcttattcctctgaaatagttgttgctccagacttcttttctttctgcaatcatgtgtcttcaaaataaccaacattaact 13699524  T
Q  131 aacttc 136  Q
    ||||||    
T  13699525 aacttc 13699530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Original strand, 50721913 - 50721972
Alignment:
Q  150 cagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaacttct 209  Q
    |||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||| |||||    
T  50721913 cagactttgttgaacttcagcttttaaggctcttcagactctctgatgacgtcagcttct 50721972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 150 - 209
Target Start/End: Complemental strand, 50790936 - 50790877
Alignment:
Q  150 cagactctgttgaacttcaacttttgaggttcttcagattctctgatgacgtcaacttct 209  Q
    |||||| |||||||||||| ||||| ||| |||||||| ||||||||||||||| |||||    
T  50790936 cagactttgttgaacttcagcttttaaggctcttcagactctctgatgacgtcagcttct 50790877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 16794135 - 16794053
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||| ||||||| |||||||||||||   ||||| |||||||||   |||| |||| |||| |||||||||||||    
T  16794135 ttcctttgctctcttttgttgtttcagaaccaatatttgactaataattttttactatgttcctgcacatttgaacaaatatt 16794053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 10852150 - 10852187
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  10852150 aatttttgtttatggtcctgcacacttgaacaaatatt 10852187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 19249183 - 19249146
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  19249183 aatttttgtttatggtcctgcacacttgaacaaatatt 19249146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 11078706 - 11078777
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    ||||| ||||||||| |||| |||||||||| |||||||| ||| ||   |||||| |||||||||||||||    
T  11078706 ctcttaagtggataagcatctaatgccttctgattcctctaaaagagtagttgctccaggcttctattcctt 11078777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 28 - 95
Target Start/End: Original strand, 15647814 - 15647881
Alignment:
Q  28 agtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctttt 95  Q
    ||||||||| ||||||| ||| |||||||||||| |||||| |||||||| || ||| |||| |||||    
T  15647814 agtggataagcatccaaagccatctaattcctcttaaatagtcattgctccagtcttttatttctttt 15647881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 17762194 - 17762057
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaac 129  Q
    ||||||| |||| ||||||||||||||||||  |||||  | |||||| | ||||||||||||| | |||   |||||||||| |||||| |  ||||||    
T  17762194 tggataaacatcaaatgccttctaattcctccaaaataatcgttgctccaagcttctattccttatacaaacttgtgtcttca-aataacca-atttaac 17762097  T
Q  130 taacttcagtttccaatcttcagactctgttgaacttcaa 169  Q
    | ||||||| |||    |||||||||||| ||||||||||    
T  17762096 tgacttcaggttcttcacttcagactctgatgaacttcaa 17762057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 30 - 169
Target Start/End: Complemental strand, 19063514 - 19063377
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaac 129  Q
    ||||||| |||| ||||||||||||||||||  |||||  | |||||| | ||||||||||||| | |||   |||||||||| |||||| |  ||||||    
T  19063514 tggataaacatcaaatgccttctaattcctccaaaataatcgttgctccaagcttctattccttatacaaacttgtgtcttca-aataacca-atttaac 19063417  T
Q  130 taacttcagtttccaatcttcagactctgttgaacttcaa 169  Q
    | ||||||| |||    |||||||||||| ||||||||||    
T  19063416 tgacttcaggttcttcacttcagactctgatgaacttcaa 19063377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 8728794 - 8728756
Alignment:
Q  294 taatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  8728794 taatttttgtctatggtcctgcacacttgaacaaatatt 8728756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 294 - 332
Target Start/End: Complemental strand, 9080681 - 9080643
Alignment:
Q  294 taatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||| ||||||||| ||||||||||||||||||    
T  9080681 taatttttgtctatggtcctgcacacttgaacaaatatt 9080643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 12397499 - 12397536
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  12397499 aatttttgtctatggtcctgcacacttgaacaaatatt 12397536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 14073076 - 14073113
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||||||||||| | ||||||||||||||||||    
T  14073076 aatttttgtttatggtcatgcacacttgaacaaatatt 14073113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 20725481 - 20725518
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  20725481 aatttttgtctatggtcctgcacacttgaacaaatatt 20725518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Original strand, 50721875 - 50721911
Alignment:
Q  98 aatgatgtgtcttcagaataacaacttttaactaact 134  Q
    |||||| |||||||||||||| |||||||||||||||    
T  50721875 aatgatatgtcttcagaataataacttttaactaact 50721911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 134
Target Start/End: Complemental strand, 50790974 - 50790938
Alignment:
Q  98 aatgatgtgtcttcagaataacaacttttaactaact 134  Q
    |||||| |||||||||||||| |||||||||||||||    
T  50790974 aatgatatgtcttcagaataataacttttaactaact 50790938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0490 (Bit Score: 79; Significance: 7e-37; HSPs: 1)
Name: scaffold0490
Description:

Target: scaffold0490; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 1 - 199
Target Start/End: Original strand, 7362 - 7560
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||| || ||||||  ||||| | ||||||| |||||||||| ||||||||| |||||||||| |  || |||||||||| ||||||| ||||||    
T  7362 gtacaatgttctattcctgcgctcttcaatggataagcatccaatgctttctaattcttctgaaatagtcgctgttctaggcttccattccttctgcaat 7461  T
Q  101 gatgtgtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttgaggttcttcagattctctgatgac 199  Q
     || ||  |||| |||||||||||||||||||||  || ||||| |||| |||||||||||||||||| ||| ||||| |||||||| |||||||||||    
T  7462 catatgaattcaaaataacaacttttaactaactctagcttccagtctttagactctgttgaacttcagcttctgaggctcttcagactctctgatgac 7560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026 (Bit Score: 70; Significance: 2e-31; HSPs: 2)
Name: scaffold1026
Description:

Target: scaffold1026; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 6 - 210
Target Start/End: Original strand, 3010 - 3215
Alignment:
Q  6 atgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgt 105  Q
    ||||||||||| ||  ||||||||||||||| |||||||||| ||||||||||||| ||| || | |||||  | ||||| || |||| | |||||||      
T  3010 atgtccttttcttgagctctttagtggataagcatccaatgcattctaattcctctaaaacagtcgttgcttcaagcttccataccttctacaatgatca 3109  T
Q  106 gtcttcagaataacaacttttaactaacttcagtttccaatcttcagactctgttgaacttcaacttttga-ggttcttcagattctctgatgacgtcaa 204  Q
    | |||||||||||||||||| |||| | ||||| ||||||||||||||||||| ||||||  | ||  ||| ||||||||||| |||||| ||||||||     
T  3110 gacttcagaataacaactttgaactgatttcagcttccaatcttcagactctgatgaactctagctcctgatggttcttcagactctctgctgacgtcag 3209  T
Q  205 cttctg 210  Q
    ||||||    
T  3210 cttctg 3215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1026; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 250 - 313
Target Start/End: Original strand, 3275 - 3338
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcct 313  Q
    |||||||||||| ||||||||||||||||||||| | ||||||||||||||||  |||||||||    
T  3275 ttcctttgctctattttgttctttcagaaccaatacttgacttataatttttgactatggtcct 3338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622 (Bit Score: 65; Significance: 2e-28; HSPs: 2)
Name: scaffold0622
Description:

Target: scaffold0622; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 3475 - 3383
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||| |||| |||||||||| | ||||||||||||| |||| |||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  3475 gtactatgttcttttcctgttccctttagtggataagcatcgaatgccttctaattcctctgaaatagccattgctctaggcttctattcctt 3383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0622; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 39 - 103
Target Start/End: Original strand, 2736 - 2800
Alignment:
Q  39 atccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    ||||||||||||| ||||||||| |||||| | |||||| |||||| ||||| || |||||||||    
T  2736 atccaatgccttccaattcctctaaaatagtcgttgctccaggcttttattctttctgcaatgat 2800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 64; Significance: 6e-28; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 9 - 136
Target Start/End: Original strand, 31670 - 31797
Alignment:
Q  9 tccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtc 108  Q
    |||||||| ||  ||||| ||||||||| |||||||| ||||||||||||| | |||||| | |||||| ||||||||||||||| ||||||||||||||    
T  31670 tccttttcatgcgctcttcagtggataagcatccaattccttctaattcctttaaaatagtcgttgctccaggcttctattccttctgcaatgatgtgtc 31769  T
Q  109 ttcagaataacaacttttaactaacttc 136  Q
    || | ||||||||  |||||||||||||    
T  31770 ttgacaataacaaactttaactaacttc 31797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0758 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0758
Description:

Target: scaffold0758; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 166
Target Start/End: Original strand, 4330 - 4472
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaac 122  Q
    |||| ||||||||| |||| |||||||||||||||||||||||||| | |||||| |||||| |||||||| || |||  ||||| |||| |||||| |     
T  4330 tcttcagtggataagcatcaaatgccttctaattcctctgaaatagtcgttgctccaggcttttattccttctgaaatcttgtgttttca-aataaccaa 4428  T
Q  123 ttttaactaacttcagtttccaatcttcagactctgttgaactt 166  Q
     ||||||||||| ||| |||    |||||||||||| |||||||    
T  4429 ctttaactaactccagcttcttgacttcagactctgatgaactt 4472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0011 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0011
Description:

Target: scaffold0011; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 137
Target Start/End: Original strand, 59625 - 59731
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaac 129  Q
    |||||||||||||||||||||||||||||||| |||||| | |||||| ||||||| ||||||| | |||| || || | | ||||||||| | ||||||    
T  59625 tggataaccatccaatgccttctaattcctctaaaatagtcgttgctccaggcttccattccttctacaatcatatg-cattagaataacatcatttaac 59723  T
Q  130 taacttca 137  Q
    ||||||||    
T  59724 taacttca 59731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 112245 - 112375
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  ||||| ||||||    ||||||||||||||||||||||| ||||||  | ||||| ||||||| |||||||| ||||||    
T  112245 gtactatgtccttttcctgcgctcttcagtggag---catccaatgccttctaattcctcagaaatatccgttgctttaggcttttattccttctgcaat 112341  T
Q  101 gatgtgtcttcagaataacaacttttaactaact 134  Q
      |||||||||| |||||| |  |||||||||||    
T  112342 cttgtgtcttcataataactaactttaactaact 112375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 13 - 93
Target Start/End: Complemental strand, 416110 - 416030
Alignment:
Q  13 tttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||| ||| ||||||||| ||||||| |||||||||||||||||| | |||||||| | |||||| |||||||||||||||    
T  416110 tttcatgtgctctttagtagataaccgtccaatgccttctaattcatttgaaatagtcgttgctccaggcttctattcctt 416030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 773 - 844
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttc-tattccttttgcaatgat 103  Q
    |||| |||||||||||||  |||| ||||||||||| | |||||| ||||||| |||||||| |||||||||    
T  773 ataagcatccaatgcctttcaatttctctgaaatagtcgttgctccaggcttcttattccttctgcaatgat 844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 44; Significance: 5e-16; HSPs: 2)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 7 - 98
Target Start/End: Complemental strand, 1904 - 1813
Alignment:
Q  7 tgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgca 98  Q
    |||||||||| ||  |||||||||||||||  ||| ||||||||||| |||||||||||||| |||| || ||||||| |||||||| ||||    
T  1904 tgtccttttcatgcgctctttagtggataagtatctaatgccttctatttcctctgaaatagtcatttctttaggcttttattccttctgca 1813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 25431 - 25394
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  25431 aatttttgtctatggtcctgcacacttgaacaaatatt 25394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0498 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0498
Description:

Target: scaffold0498; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 29 - 99
Target Start/End: Complemental strand, 3350 - 3280
Alignment:
Q  29 gtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaa 99  Q
    |||||||| |||||||||||||| |||||||||||||||| |||||||| || ||| |||||||| |||||    
T  3350 gtggataagcatccaatgccttcaaattcctctgaaatagtcattgctccagacttttattccttctgcaa 3280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0351 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: scaffold0351
Description:

Target: scaffold0351; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 9325 - 9217
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| ||||||||||||||  ||||| ||||||    ||||||||||||||||||||||| ||||||  | ||||| ||||||| |||||||| ||||||    
T  9325 gtactatgtccttttcctgcgctcttcagtggag---catccaatgccttctaattcctcagaaatatccgttgctttaggcttttattccttctgcaat 9229  T
Q  101 gatgtgtcttca 112  Q
      ||||||||||    
T  9228 cttgtgtcttca 9217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0683 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0683
Description:

Target: scaffold0683; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 22 - 93
Target Start/End: Original strand, 435 - 506
Alignment:
Q  22 ctctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||||||||| ||||  || ||||||||||||||||||||||||| | | ||||||||||||| ||||||||    
T  435 ctctttagtgaataagtattcaatgccttctaattcctctgaaattgtcgttgctctaggcttttattcctt 506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0040 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0040
Description:

Target: scaffold0040; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 4094 - 3961
Alignment:
Q  1 gtaccatgtccttttcctgtactctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaat 100  Q
    |||| |||||||||| |||  ||||| |  |||||| |||| ||| ||||||||||||| |||||||| | || ||| |  |||||||||||| ||||||    
T  4094 gtactatgtcctttttctgcgctcttcaaaggataaacatcaaattccttctaattcctatgaaatagccgttcctccaaacttctattccttctgcaat 3995  T
Q  101 gatgtgtcttcagaataacaacttttaactaact 134  Q
      |||||||||| |||||| |  |||||||||||    
T  3994 cttgtgtcttcataataactaactttaactaact 3961  T

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Target: scaffold0092 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0092
Description:

Target: scaffold0092; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 8150 - 8189
Alignment:
Q  28 agtggataaccatccaatgccttctaattcctctgaaata 67  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  8150 agtggataatcatccaatgccttctaattcctctgaaata 8189  T

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Target: scaffold0388 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0388
Description:

Target: scaffold0388; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 112
Target Start/End: Original strand, 5445 - 5527
Alignment:
Q  30 tggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgatgtgtcttca 112  Q
    |||||||  ||||||||||||| |||||||||||| ||| | |||||| ||||||||||||| | |||||   ||||||||||    
T  5445 tggataaatatccaatgccttcaaattcctctgaattagccgttgctccaggcttctattccatctgcaaacttgtgtcttca 5527  T

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Target: scaffold0067 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 23 - 96
Target Start/End: Complemental strand, 16470 - 16397
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttg 96  Q
    |||| ||||| ||| ||||||||||||||||||| |||| |||||| | |||||  || |||||||||||||||    
T  16470 tcttcagtgggtaagcatccaatgccttctaatttctctaaaatagtcgttgcttcagtcttctattccttttg 16397  T

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Target: scaffold0025 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0025
Description:

Target: scaffold0025; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 295 - 331
Target Start/End: Original strand, 74953 - 74989
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatat 331  Q
    ||||||||| |||||||||||||||||||||||||||    
T  74953 aatttttgtctatggtcctacacacttgaacaaatat 74989  T

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Target: scaffold0035 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 332
Target Start/End: Original strand, 30204 - 30239
Alignment:
Q  297 tttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||| ||||||||||||||||||||||||||||    
T  30204 tttttgtctatggtcctacacacttgaacaaatatt 30239  T

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Target: scaffold0035; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 103
Target Start/End: Original strand, 29867 - 29936
Alignment:
Q  33 ataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattccttttgcaatgat 103  Q
    |||| |||||||||||||| ||||| |||||| ||| | |||||| ||||||||||| ||| |||||||||    
T  29867 ataagcatccaatgccttccaattcatctgaattagtcgttgctccaggcttctatt-cttctgcaatgat 29936  T

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Target: scaffold1107 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1107
Description:

Target: scaffold1107; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 93
Target Start/End: Complemental strand, 2410 - 2340
Alignment:
Q  23 tctttagtggataaccatccaatgccttctaattcctctgaaatagacattgctctaggcttctattcctt 93  Q
    |||| ||||| ||| |||||||||||||||||||||||| |||||| | |||||  || ||| ||||||||    
T  2410 tcttcagtgggtaagcatccaatgccttctaattcctctaaaatagtcgttgcttcagtcttatattcctt 2340  T

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Target: scaffold0861 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0861
Description:

Target: scaffold0861; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 250 - 332
Target Start/End: Complemental strand, 4719 - 4637
Alignment:
Q  250 ttcctttgctcttttttgttctttcagaaccaatgcatgacttataatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||| |||||||||| |||||||     |||| |   ||||||||| |||||||||| |||||||||||||||||    
T  4719 ttcctttgctctcttttgttcttccagaaccttataatgattccaaatttttgtctatggtcctatacacttgaacaaatatt 4637  T

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Target: scaffold0037 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0037
Description:

Target: scaffold0037; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 79 - 149
Target Start/End: Original strand, 87021 - 87091
Alignment:
Q  79 aggcttctattccttttgcaatgatgtgtcttcagaataacaacttttaactaacttcagtttccaatctt 149  Q
    ||||||| ||||||| |||||| || ||  |||||||||| ||||||||||||||| ||| ||||| ||||    
T  87021 aggcttccattccttctgcaatcatatgaattcagaataaaaacttttaactaactccagcttccagtctt 87091  T

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Target: scaffold0916 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0916
Description:

Target: scaffold0916; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 2365 - 2328
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| |||| |||||||||||||||||||||||    
T  2365 aatttttgtctatgatcctacacacttgaacaaatatt 2328  T

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Target: scaffold0888 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 3861 - 3824
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||| | ||||||||||||||||||||||||||||    
T  3861 aatttttctctatggtcctacacacttgaacaaatatt 3824  T

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Target: scaffold0273 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0273
Description:

Target: scaffold0273; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 8218 - 8255
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  8218 aatttttgtctatggtcctgcacacttgaacaaatatt 8255  T

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Target: scaffold0217 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0217
Description:

Target: scaffold0217; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 19418 - 19455
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||||||||||  |||||||||||||||||    
T  19418 aatttttgtttatggtcctctacacttgaacaaatatt 19455  T

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Target: scaffold0201 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0201
Description:

Target: scaffold0201; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 19432 - 19469
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||| ||| ||||||||||||||||||||||||||||    
T  19432 aatttgtgtctatggtcctacacacttgaacaaatatt 19469  T

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Target: scaffold0161 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Complemental strand, 9865 - 9828
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    |||||||||||||||||||  |||||||||||||||||    
T  9865 aatttttgtttatggtcctgtacacttgaacaaatatt 9828  T

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Target: scaffold0020 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 145253 - 145290
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| ||||||||| ||||||||||||||||||    
T  145253 aatttttgtctatggtcctgcacacttgaacaaatatt 145290  T

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Target: scaffold0007 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 295 - 332
Target Start/End: Original strand, 143474 - 143511
Alignment:
Q  295 aatttttgtttatggtcctacacacttgaacaaatatt 332  Q
    ||||||||| |||||||||| |||||||||||||||||    
T  143474 aatttttgtctatggtcctatacacttgaacaaatatt 143511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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