View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_high_12 (Length: 368)
Name: NF20165_high_12
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 8052900 - 8053254
Alignment:
| Q |
1 |
ctaaacagttatggagtgattaggtgtgtcctgatgttgatgttgatatgtatcgtgtccaacattaacaaatataactattaaattatgttattttatc |
100 |
Q |
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|||| ||||||||||||||||||||||||| | |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||| |
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| T |
8052900 |
ctaaccagttatggagtgattaggtgtgtc------tcgatgttgatatgtatcgtgtccgacatcaacaaatataactattaaattatgttattttatc |
8052993 |
T |
|
| Q |
101 |
aaattatcatctgtatcgaggtatgcgtgcgaagaggtttccgtctcacctaccattagacctgaacaaatcctcttatcagtagaataacatattccaa |
200 |
Q |
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||||||| |||||||||||||||||||||||||||| || | | ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
8052994 |
aaattattatctgtatcgaggtatgcgtgcgaagagcttgctgcctcacctaccattaggcctgaacaaatcctcttatcagtagaataacatattccaa |
8053093 |
T |
|
| Q |
201 |
caagtaaaagactagtcttatcaagtatcaacagtaaaaatttcagtggtcattacctctctgctagaacgagcaattagacaatcagtttttgcatctt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8053094 |
caagtaaaagactagtcttatcaagtatcaacagtaaaaatttcagtggtcattacctctctgctagaacgagcaattagacaatcagtttttgcatctt |
8053193 |
T |
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| Q |
301 |
aagctcaaagaatcgtcatatttttctacacgaaaacactgatatgatattgcagtattat |
361 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8053194 |
aagctcaaagaatcgtcatatttttctacacgaaaacactgatatgatattgcagtattat |
8053254 |
T |
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