View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20165_high_14 (Length: 320)

Name: NF20165_high_14
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20165_high_14
NF20165_high_14
[»] chr1 (1 HSPs)
chr1 (18-305)||(38308724-38309012)


Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 38308724 - 38309012
Alignment:
Q  18 taatctgctgcaaaaaataactgagtttagctaacatttgaatttaaattaatattttcattaacattgttcgtgtttagatagatttatagtttaaaga 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  38308724 taatctgctgcaaaaaataactgagtttagctaacatttgaatttaaattaatattttcattaacattattcgtgtttagatagatttatagtttaaaga 38308823  T
Q  118 cc-actaccttatttatcaaaattaaaaactaaatgagcactacaagctacaatattttaaactcccagctcacattcaactgctctgcctaaagagaaa 216  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38308824 cccactaccttatttatcaaaattaaaaactaaatgagcactacaagctacaatattttaaactcccagctcacattcaactgctctgcctaaagagaaa 38308923  T
Q  217 aaactcacatttactgccattgcttcacttctaatcaccttactgtcaatcaattccaacaaaaaataatcaaatttagtttaaaacat 305  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38308924 aaactcacatttactgccattgcttcacttctaatcaccttactgtcaatcaattccaacaaaaaataatcaaatttagtttaaaacat 38309012  T

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