View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_high_18 (Length: 251)
Name: NF20165_high_18
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 225; Significance: 1e-124; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 8 - 251
Target Start/End: Complemental strand, 45896382 - 45896138
Alignment:
| Q |
8 |
agataatacttgaaaataattagcagctccaaatcactagtatttaagccaccacaccacatttggccctcattacatcagcgataagcaacataatttt |
107 |
Q |
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| T |
45896382 |
agataatacttgaaaataattagcagctccaaatcactagtatttaagccaccacaccacatttggccctcattacatcagcgataagcaacataattta |
45896283 |
T |
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| Q |
108 |
atatttttt-gaaataataagcaacataaaatacagtgaaaacttttcaagtttataattacatagcaaatgtccaaacacacgtcacactaacatatag |
206 |
Q |
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| T |
45896282 |
atatttttttgaaataataagcaacataaaatacagtgaaaacttttcaagtttataattacatagcaaatgtccaaacacacgtcatactgacatatag |
45896183 |
T |
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| Q |
207 |
tgttcctcaaatgtcagaagcaaatgtccaaacaacagtagcaac |
251 |
Q |
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| T |
45896182 |
tgttcctcaaatgtcagaagcaaatgtccaaacaacagtagcaac |
45896138 |
T |
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