View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_high_22 (Length: 238)
Name: NF20165_high_22
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 15173135 - 15173337
Alignment:
| Q |
21 |
ggctcttggttctgttgagattttccttagtcgtcattgtccgttgtggtatggttatggaggaaaactaaagtatcttgagaggttggcttatactaac |
120 |
Q |
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| T |
15173135 |
ggctcttggttctgttgagattttccttagtcgccattgtccgttgtggtatggttatggaggaaaactaaagtatcttgagaggttggcttatactaac |
15173234 |
T |
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| Q |
121 |
accattgtttatccattcacttcaatccctttgcttgcatactgcacaattccggctgtgtgtctcctcactggaaagttcatcattcccactgtaagtt |
220 |
Q |
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| T |
15173235 |
accattgtttatccattcacttcaatccctttgcttgcatactgcacaattccggctgtgtgtctcctcactggaaagttcatcattcccactgtaagtt |
15173334 |
T |
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| Q |
221 |
cat |
223 |
Q |
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| T |
15173335 |
cat |
15173337 |
T |
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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 219
Target Start/End: Original strand, 30259275 - 30259334
Alignment:
| Q |
160 |
tactgcacaattccggctgtgtgtctcctcactggaaagttcatcattcccactgtaagt |
219 |
Q |
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|||||||||||||| ||| | ||||| || ||||||||||||||| | |||||||||||| |
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| T |
30259275 |
tactgcacaattccagctatctgtcttctgactggaaagttcatcctccccactgtaagt |
30259334 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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