View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20165_high_23 (Length: 237)
Name: NF20165_high_23
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_high_23 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 38256076 - 38255856
Alignment:
| Q |
1 |
catatctctccaacttgaaagctacaatttgctcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgc |
100 |
Q |
| |
|
|||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38256076 |
catatctctccaacgtgaaagcaacaatttcctcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgc |
38255977 |
T |
|
| Q |
101 |
aagttggtgacccaattcatcattgatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgcc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38255976 |
aagttggtgacccaattcatcattgatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgcc |
38255877 |
T |
|
| Q |
201 |
ccagtcactatagctacctta |
221 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
38255876 |
ccagtcactatagctacctta |
38255856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 18 - 221
Target Start/End: Complemental strand, 45152235 - 45152032
Alignment:
| Q |
18 |
aaagctacaatttgctcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgcaagttggtgacccaatt |
117 |
Q |
| |
|
|||||||| ||| |||||||||||| || || ||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
45152235 |
aaagctacggtttcctcaacttgtttttcatcactcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaatt |
45152136 |
T |
|
| Q |
118 |
catcattgatatctgctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctac |
217 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||||| ||| |||| |||| || || |||||||| |||||| |||||||||||||||| || |
|
|
| T |
45152135 |
catcattgatatctgctataactacaaatgctccattttccacgaatgtcttcactgtctccgcccctattccgcttgctcccccagtcactatagcaac |
45152036 |
T |
|
| Q |
218 |
ctta |
221 |
Q |
| |
|
|||| |
|
|
| T |
45152035 |
ctta |
45152032 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 33 - 221
Target Start/End: Complemental strand, 45141577 - 45141389
Alignment:
| Q |
33 |
tcaacttgtttctcctctctcacgtcacagtggtggtaactcactttgtctaacccaattgaagttgcaagttggtgacccaattcatcattgatatctg |
132 |
Q |
| |
|
||||||||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
45141577 |
tcaacttgtttttcatctctcacatcacaatggtggtaactcactttgtctaacccaattgaagttgcaacttggtgacccaattcatcattgatatctg |
45141478 |
T |
|
| Q |
133 |
ctatgactacaaatgctccattttccacaaatatctttactgcttctgctcctattccacttgctgccccagtcactatagctacctta |
221 |
Q |
| |
|
|||| ||||||||||||||||||||||| ||| |||| ||| || || |||||||| |||||| |||||||||||||||| |||||| |
|
|
| T |
45141477 |
ctataactacaaatgctccattttccacgaatgtcttcgctgtctccgcccctattccgcttgctcccccagtcactatagcaacctta |
45141389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University