View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20165_high_24 (Length: 234)

Name: NF20165_high_24
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20165_high_24
NF20165_high_24
[»] chr4 (2 HSPs)
chr4 (20-216)||(31205213-31205414)
chr4 (20-56)||(32399663-32399699)
[»] chr8 (1 HSPs)
chr8 (94-212)||(43415531-43415655)
[»] chr7 (1 HSPs)
chr7 (97-211)||(43704000-43704120)
[»] chr5 (1 HSPs)
chr5 (116-207)||(8359035-8359133)


Alignment Details
Target: chr4 (Bit Score: 145; Significance: 2e-76; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 20 - 216
Target Start/End: Complemental strand, 31205414 - 31205213
Alignment:
Q  20 attcaaaactaagggataaaggaagtaccaaaggtggtatctcagctaa----agcgtccaacatgagtgacaccactactaccattgttgacaacacat 115  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||      ||| |||||||||| ||||||||||||||||||||||||||||||||    
T  31205414 attcaaaactaaggaataaaggaagtaccaaaggtggtatctcagctttcatgagcatccaacatgaatgacaccactactaccattgttgacaacacat 31205315  T
Q  116 agaagagagaagacgggg-aacccacaaacattgaattggagaagaaacccacaagtgaaatcagtatcaattcaagaagcaccttcaaattgctagata 214  Q
    ||||||||||||| |||| ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31205314 agaagagagaagaagggggaacccatgaacattgaattggagaagaaacccacaagtgaaatcagtatcaattcaagaagcaccttcaaattgctagata 31205215  T
Q  215 at 216  Q
    ||    
T  31205214 at 31205213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 20 - 56
Target Start/End: Original strand, 32399663 - 32399699
Alignment:
Q  20 attcaaaactaagggataaaggaagtaccaaaggtgg 56  Q
    |||||||||||||||||||||||||||||||||||||    
T  32399663 attcaaaactaagggataaaggaagtaccaaaggtgg 32399699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 94 - 212
Target Start/End: Original strand, 43415531 - 43415655
Alignment:
Q  94 actaccattgttgacaacacatagaagagagaagacggggaacccacaaacattgaattggagaagaaac------ccacaagtgaaatcagtatcaatt 187  Q
    ||||||||||| ||||| ||   |||||||||||||||||||||||||||||||||||||||||||||||       || ||||||||||| ||||||||    
T  43415531 actaccattgtcgacaaaactgggaagagagaagacggggaacccacaaacattgaattggagaagaaacaacgattcaaaagtgaaatcaatatcaatt 43415630  T
Q  188 caagaagcaccttcaaattgctaga 212  Q
    |||||||||||||||||||||||||    
T  43415631 caagaagcaccttcaaattgctaga 43415655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 211
Target Start/End: Original strand, 43704000 - 43704120
Alignment:
Q  97 accattgttgacaacacatagaagagagaagacggggaacccacaaacattgaattggagaagaaac------ccacaagtgaaatcagtatcaattcaa 190  Q
    |||||||| |||||||||  ||||||||||||| |||||||| ||||||||||||||||||||||||       || ||||||||||| |||||||||||    
T  43704000 accattgtcgacaacacagggaagagagaagacagggaacccgcaaacattgaattggagaagaaacaacgattcaaaagtgaaatcaatatcaattcaa 43704099  T
Q  191 gaagcaccttcaaattgctag 211  Q
    |||||||||||||||||||||    
T  43704100 gaagcaccttcaaattgctag 43704120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 116 - 207
Target Start/End: Complemental strand, 8359133 - 8359035
Alignment:
Q  116 agaagagagaagacgggg-aacccacaaacattgaattggagaagaaac------ccacaagtgaaatcagtatcaattcaagaagcaccttcaaattg 207  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||       |||||||||||||| ||||||||||||||| ||||||||||||    
T  8359133 agaagagagaagacgggggaacccacaaacattgaattggagaagaaacaatgattcacaagtgaaatcaatatcaattcaagaagtaccttcaaattg 8359035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University