View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_high_5 (Length: 494)
Name: NF20165_high_5
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 194 - 475
Target Start/End: Original strand, 540571 - 540854
Alignment:
| Q |
194 |
tgggggtttccattgtccgacaatttggtagctatgatcaattttttgttttactcattatgatcatgtgataaaacaatttgaaatactatataaatat |
293 |
Q |
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| T |
540571 |
tgggggtttccattgtccgacaatttggtagctatgattaattttttgttttactcattatgatcatgtgataaaacaatttgaaatactatataaatat |
540670 |
T |
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| Q |
294 |
taattgtgtttatcacgtgcactactccctctatgatttccatcgaagaatggcactattcacttttgaaat--agagagagaagaggttactaatagag |
391 |
Q |
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| T |
540671 |
taattgtgtttatcacgtgcactactcccactatgatttccattgaagaatggcactattcacttttgaaatagagagagagaagaggttactaatagag |
540770 |
T |
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| Q |
392 |
gaaagaaacaagtctctgaggcacaattgtatatatgcagacagacagcaatgcaaacgttaaataaattggcaaggacaggga |
475 |
Q |
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| T |
540771 |
gaaagaaacaagtctctgaggcacaattgtatatatgcagacagacagcaatgcaaacgttaaataaattggcaaggacaggga |
540854 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 9 - 82
Target Start/End: Original strand, 540393 - 540466
Alignment:
| Q |
9 |
gagagagaagaacatggaactgcatctactagtggctataacaggtcatattagaaggaccacagctggacctt |
82 |
Q |
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| T |
540393 |
gagagagaagaacatggaactgcatctactactagctataacaggtcatattagaaggaccacagctggacctt |
540466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 28823950 - 28824022
Alignment:
| Q |
10 |
agagagaagaacatggaactgcatctactagtggctataacaggtcatattagaaggaccacagctggacctt |
82 |
Q |
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| T |
28823950 |
agagagaagaacatggaactgcatctaccacgggctataacaggtcatattagaaggaccacagttggacctt |
28824022 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 30562318 - 30562390
Alignment:
| Q |
10 |
agagagaagaacatggaactgcatctactagtggctataacaggtcatattagaaggaccacagctggacctt |
82 |
Q |
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| T |
30562318 |
agagagaagaacatggaactgcatctaccacgggctatatcaggtcatattagaaggaccacagttggacctt |
30562390 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 10 - 82
Target Start/End: Original strand, 54902111 - 54902183
Alignment:
| Q |
10 |
agagagaagaacatggaactgcatctactagtggctataacaggtcatattagaaggaccacagctggacctt |
82 |
Q |
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| T |
54902111 |
agagagaagaacatggaactgcatctaccacgggctatatcaggtcatattagaaggaccacagttggacctt |
54902183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 9333480 - 9333540
Alignment:
| Q |
10 |
agagagaagaacatggaactgcatctactagtggctataacaggtcatattagaaggacca |
70 |
Q |
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| T |
9333480 |
agagagaagaacatggaactgcatctaccacgggctatatcaggtcatattagaaggacca |
9333540 |
T |
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