View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_high_9 (Length: 420)
Name: NF20165_high_9
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 361; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 16 - 404
Target Start/End: Original strand, 38456202 - 38456590
Alignment:
| Q |
16 |
atcggacaatatcatctcaaccattaatatatccactaccatttctcatctggtaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgca |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
38456202 |
atcggacaatatcatctcaaccattaatatatccactaccatttctcatctgctaagaaaaaagaaattaaattcaattgaaaaagttatttcaagtgca |
38456301 |
T |
|
| Q |
116 |
gaatttggttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttaaattatgtgtagtacgcac |
215 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38456302 |
gaatttggttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtgtagtacgcac |
38456401 |
T |
|
| Q |
216 |
aaaagaagatattttcttagatttatcaagagatatacatgacactaccaacacaaagccacaaaagaagatactttcttagatttatcaagcctcaaaa |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
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| T |
38456402 |
aaaagaagatattttcttagatttatcaagagatatacatgacactaccaacacaaaagcacaaaagaagatattttcttagatttatcaagcctcaaaa |
38456501 |
T |
|
| Q |
316 |
tcacttctttgttggaatcaattctcactgctgcaaacatgaaaccaaacataacttacagttttgcaatgctacaacccacatatttt |
404 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38456502 |
tcacttctttgttggaatcaattctaactgctgcaaacatgaaaccaaacataacttacagttttgcaatgctacaacccacatatttt |
38456590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 168; E-Value: 7e-90
Query Start/End: Original strand, 16 - 211
Target Start/End: Original strand, 35671889 - 35672084
Alignment:
| Q |
16 |
atcggacaatatcatctcaaccattaatatatccactaccatttctcatctggtaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgca |
115 |
Q |
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|
||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| | |
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| T |
35671889 |
atcggacaatatcatctcagccattaatatatccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgta |
35671988 |
T |
|
| Q |
116 |
gaatttggttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttaaattatgtgtagtac |
211 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
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| T |
35671989 |
gaatttgattaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattatgtatagtac |
35672084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 212 - 306
Target Start/End: Original strand, 35672317 - 35672411
Alignment:
| Q |
212 |
gcacaaaagaagatattttcttagatttatcaagagatatacatgacactaccaacacaaagccacaaaagaagatactttcttagatttatcaa |
306 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |
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| T |
35672317 |
gcacaaaagaatatattttcttagatttatcaagagatatacatgacactaccaacacaaatgcacaaaagaagatattttcttagatttatcaa |
35672411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 70 - 145
Target Start/End: Original strand, 13805218 - 13805293
Alignment:
| Q |
70 |
aagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgcagaatttggttaagaaactaattcaaacata |
145 |
Q |
| |
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||||||||||||| |||| |||||||||||||||| |||| |||||||||| ||| ||||||||| ||||||||| |
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|
| T |
13805218 |
aagaaaaaagaaaaaaaaagcaattgaaaaagttatctcaactgcagaatttagtttagaaactaaatcaaacata |
13805293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 167; Significance: 3e-89; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 20130982 - 20131168
Alignment:
| Q |
16 |
atcggacaatatcatctcaaccattaatatatccactaccatttctcatctggtaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgca |
115 |
Q |
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|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
20130982 |
atcggacaatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgca |
20131081 |
T |
|
| Q |
116 |
gaatttggttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttaaattat |
202 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
20131082 |
gaatttggttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattat |
20131168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 167; E-Value: 3e-89
Query Start/End: Original strand, 16 - 202
Target Start/End: Complemental strand, 22201888 - 22201702
Alignment:
| Q |
16 |
atcggacaatatcatctcaaccattaatatatccactaccatttctcatctggtaagaaaaaagaaataaaattcaattgaaaaagttatttcaagtgca |
115 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
22201888 |
atcggacaatatcatctcaaccattaatatctccactaccatttctcatctgctaagaaaaaaggaataaaattcaattgaaaaagttatttcaagtgca |
22201789 |
T |
|
| Q |
116 |
gaatttggttaagaaactaattcaaacatagggcttacaatttcaataatgagttccttcaaaatcaaacaaaatatcttaaattat |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
22201788 |
gaatttggttaagaaactaattcaaacatagggcctacaatttcaataatgagttccttcaaaatcaaacaaaatatcttagattat |
22201702 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 16 - 48
Target Start/End: Complemental strand, 31192358 - 31192326
Alignment:
| Q |
16 |
atcggacaatatcatctcaaccattaatatatc |
48 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
31192358 |
atcggacaatatcatctcaaccattaatatatc |
31192326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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