View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_13 (Length: 402)
Name: NF20165_low_13
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_13 |
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Alignment Details
Target: chr8 (Bit Score: 163; Significance: 6e-87; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 163; E-Value: 6e-87
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 9334388 - 9334562
Alignment:
| Q |
19 |
tcgcatttaaaacaacaagaaagcgtttgaagtcttgaaaattatttttgaatagttttgttcattggcagcaaaaaagagtaagaatgcaccttatttt |
118 |
Q |
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| T |
9334388 |
tcgcatttaaaacaacaagaaagcttttgaagtcttgaaaattatttttgaatagctttgttcattggcagcaaaaaagagtaagaatgcaccttatttt |
9334487 |
T |
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| Q |
119 |
caatgatactctcaaggaattagagtaaaacatggagaggatcactgaaaatccatatatctacgttattttacg |
193 |
Q |
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| T |
9334488 |
caatgatactctcaaggaattagagtaaaacatggagaggatcactgaaaatccatatatctaccttattttacg |
9334562 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 219 - 387
Target Start/End: Original strand, 9334557 - 9334725
Alignment:
| Q |
219 |
tttacaagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaat |
318 |
Q |
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| T |
9334557 |
tttacgagtcctgcttccaaatctttttcctacaggaaaaaagaaagaaagagagaattggatactttacaatttacactaggaggagaatataataaat |
9334656 |
T |
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| Q |
319 |
caaagagagttgttctttaggcactctttaattgtacaaaaaatgcaactattgttggttgagcctatg |
387 |
Q |
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| T |
9334657 |
caaagagagttgttctttaggcactctttaattgtaccaaaaatgcaactattgttggttgagcctatg |
9334725 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 161 - 321
Target Start/End: Original strand, 9941136 - 9941290
Alignment:
| Q |
161 |
cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttacaagtcctgcttccaaatctttttcctacaggaaaaaa |
260 |
Q |
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| T |
9941136 |
cactgaaaattcagatatctaccttattctgcggcttggctttgctgttcccgtaacatttacaacttctgcttcccactcttttttctacag----aaa |
9941231 |
T |
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| Q |
261 |
gaaagaaagagagaattggatactttacaatttacattaggaggagaatataataaatcaa |
321 |
Q |
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| T |
9941232 |
gaaaga--gagagaattggatacattacaatttacattaggaggagaatataacaaatcaa |
9941290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 161 - 261
Target Start/End: Original strand, 8207599 - 8207699
Alignment:
| Q |
161 |
cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttacaagtcctgcttccaaatctttttcctacaggaaaaaa |
260 |
Q |
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| T |
8207599 |
cactgaaaactcagatatctaccttattttgcggcttggctttgctgttccggtaacatttacaacttccgcttccaactcttttttctacagaaaaaaa |
8207698 |
T |
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| Q |
261 |
g |
261 |
Q |
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| T |
8207699 |
g |
8207699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 281 - 322
Target Start/End: Original strand, 8207707 - 8207748
Alignment:
| Q |
281 |
tactttacaatttacattaggaggagaatataataaatcaaa |
322 |
Q |
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| T |
8207707 |
tactttacgatttacattaggaggaaaatataataaaccaaa |
8207748 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 161 - 322
Target Start/End: Original strand, 42362717 - 42362886
Alignment:
| Q |
161 |
cactgaaaatccatatatctacgttattttacggcttggctttgctggtctcgtaacctttacaagtcctgcttccaaatctttttcctac-aggaaaaa |
259 |
Q |
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||||||||| || |||||||| ||||||||||||||||||||||| || |||||| ||||||| | | |||||||| ||||||| |||| | ||||| |
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| T |
42362717 |
cactgaaaactcagatatctaccttattttacggcttggctttgctattcccgtaacatttacaacttccgcttccaactcttttttctacaaaaaaaaa |
42362816 |
T |
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| Q |
260 |
agaaagaaagaga-------gaattggatactttacaatttacattaggaggagaatataataaatcaaa |
322 |
Q |
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| T |
42362817 |
ataaataaataaataaaaaggaattggaaaatttacagtttatattaggaggagaatataataaatcaaa |
42362886 |
T |
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