View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_16 (Length: 320)
Name: NF20165_low_16
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 277; Significance: 1e-155; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 18 - 305
Target Start/End: Original strand, 38308724 - 38309012
Alignment:
| Q |
18 |
taatctgctgcaaaaaataactgagtttagctaacatttgaatttaaattaatattttcattaacattgttcgtgtttagatagatttatagtttaaaga |
117 |
Q |
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| T |
38308724 |
taatctgctgcaaaaaataactgagtttagctaacatttgaatttaaattaatattttcattaacattattcgtgtttagatagatttatagtttaaaga |
38308823 |
T |
|
| Q |
118 |
cc-actaccttatttatcaaaattaaaaactaaatgagcactacaagctacaatattttaaactcccagctcacattcaactgctctgcctaaagagaaa |
216 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38308824 |
cccactaccttatttatcaaaattaaaaactaaatgagcactacaagctacaatattttaaactcccagctcacattcaactgctctgcctaaagagaaa |
38308923 |
T |
|
| Q |
217 |
aaactcacatttactgccattgcttcacttctaatcaccttactgtcaatcaattccaacaaaaaataatcaaatttagtttaaaacat |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38308924 |
aaactcacatttactgccattgcttcacttctaatcaccttactgtcaatcaattccaacaaaaaataatcaaatttagtttaaaacat |
38309012 |
T |
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