View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_17 (Length: 308)
Name: NF20165_low_17
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 274; Significance: 1e-153; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 41080848 - 41081142
Alignment:
| Q |
1 |
gttattcagaggatatcatggtggcaaggagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatctgcatattttgaggca |
100 |
Q |
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| T |
41080848 |
gttattcagaggatatcatggtggcaatgagatttgtggagtctcttatgccaatatacagtattatgctagttgtgtgtaatctgcatattttgaggca |
41080947 |
T |
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| Q |
101 |
tctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggtgt |
200 |
Q |
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| T |
41080948 |
tctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatattatggtggagtatgataagtaggggggt |
41081047 |
T |
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| Q |
201 |
tatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttaccaattaatatggttctactcatgcctaatgttaaaact |
299 |
Q |
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| T |
41081048 |
tatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttacc----aatatggttctactcatgcctaatgttaaaact |
41081142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 129; E-Value: 9e-67
Query Start/End: Original strand, 74 - 299
Target Start/End: Original strand, 41088931 - 41089152
Alignment:
| Q |
74 |
tgtgtgtaatctgcatattttgaggcatctgcggttaatattttaggtaatttattttgtataatctgcatatataagacagctgcttctattttatatt |
173 |
Q |
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||||||||||||||||||||||||||| || | ||||||||| |||||||||||||||||||||||| ||||||| || |||||||||||||||||||| |
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| T |
41088931 |
tgtgtgtaatctgcatattttgaggcagctactgttaatattctaggtaatttattttgtataatctacatatatgaggcagctgcttctattttatatc |
41089030 |
T |
|
| Q |
174 |
atggtggagtatgataagtaggggtgttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttaccaattaatatgg |
273 |
Q |
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| T |
41089031 |
atggtggagtttgataagccggggtctgatgtggtttcttgacaggaaatggcattttaacgaatctaaatcatagcttatcccttacc----attatgg |
41089126 |
T |
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| Q |
274 |
ttctactcatgcctaatgttaaaact |
299 |
Q |
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||||| |||||| ||||||||||||| |
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| T |
41089127 |
ttctagtcatgcataatgttaaaact |
41089152 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 163 - 299
Target Start/End: Original strand, 41103396 - 41103527
Alignment:
| Q |
163 |
tattttatattatggtggagtatgataagtaggggtgttatgtcgtttcttgacaggaaatggcattttaaccaatcaaaatcatagcatatcccttacc |
262 |
Q |
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|||||||||| |||||||||| ||||||| |||| | |||| |||||||||||| ||||| ||||||||||||| ||||||||||| ||||| ||||| |
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| T |
41103396 |
tattttatatcatggtggagtttgataagccagggtctgatgtggtttcttgacag-aaatgccattttaaccaattaaaatcatagcttatccgttacc |
41103494 |
T |
|
| Q |
263 |
aattaatatggttctactcatgcctaatgttaaaact |
299 |
Q |
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|||||| |||||||||||| ||||||| ||||| |
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| T |
41103495 |
----aatatgattctactcatgcataatgttgaaact |
41103527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 1216631 - 1216677
Alignment:
| Q |
1 |
gttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
47 |
Q |
| |
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|||||||| |||||| |||||||||||||||||||||||||||||| |
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| T |
1216631 |
gttattcaacggatataatggtggcaaggagatttgtggagtctctt |
1216677 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 47
Target Start/End: Original strand, 41103264 - 41103310
Alignment:
| Q |
1 |
gttattcagaggatatcatggtggcaaggagatttgtggagtctctt |
47 |
Q |
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||||||||| ||||||||||||| |||| |||||||||||||||||| |
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| T |
41103264 |
gttattcagtggatatcatggtgacaagtagatttgtggagtctctt |
41103310 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 74
Target Start/End: Original strand, 41088836 - 41088913
Alignment:
| Q |
1 |
gttattcagaggatatcatggtggcaaggagatttgtggagtc----tcttatgccaatatacagtattatgctagtt |
74 |
Q |
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|||||||||||||||||||||||| |||||||||| ||| ||| |||| ||||||| |||||||||||||||| |
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| T |
41088836 |
gttattcagaggatatcatggtggtaaggagatttatggggtctctttcttgtgccaattcgcagtattatgctagtt |
41088913 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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