View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_18 (Length: 290)
Name: NF20165_low_18
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 17 - 271
Target Start/End: Complemental strand, 44650385 - 44650135
Alignment:
| Q |
17 |
aatattccaattggagaagaaatggaatcacaacttctacagtttgcaaagaaattacgctgaggaaggggaaagagtgagccatgttctaataatattc |
116 |
Q |
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| T |
44650385 |
aatattccaattggagaagaaatggaatcacaacttctacagtttgcaaagaaattacgctgaggaaggggaaagagtgagccatgttctaataatattc |
44650286 |
T |
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| Q |
117 |
caatttttattttggatgtacgatcaaataaattaaacagttgagatattggtgtacgtatctagtaataaactagagggagtctctatatatatcattt |
216 |
Q |
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| T |
44650285 |
caatttttattttggatgtacgatcaaataaattaaacagttgagattttggtgtacgtatctagtaataaactagagggagtctct----atatcattt |
44650190 |
T |
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| Q |
217 |
aagcaagcctaagggggaggtgagtgtaattttaactagtgactccatggttcaa |
271 |
Q |
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| T |
44650189 |
aagcaagcctaagggggaggtgagtgtaattttaactagtgactccatggttcaa |
44650135 |
T |
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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 135 - 163
Target Start/End: Complemental strand, 31552066 - 31552038
Alignment:
| Q |
135 |
tacgatcaaataaattaaacagttgagat |
163 |
Q |
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| T |
31552066 |
tacgatcaaataaattaaacagttgagat |
31552038 |
T |
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