View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_29 (Length: 227)
Name: NF20165_low_29
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 40 - 209
Target Start/End: Original strand, 3331950 - 3332119
Alignment:
| Q |
40 |
ttgaagttgttgaatagaagaaccatcatcttcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
139 |
Q |
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| T |
3331950 |
ttgaagttgttgaatagaagaaccatcatcatcttccaaaggaagtctctcataagcagcgttactaaaagaagcagacataataacaacaggtccagaa |
3332049 |
T |
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| Q |
140 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaac |
209 |
Q |
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| T |
3332050 |
gcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaatatatggtcaaac |
3332119 |
T |
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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 125 - 198
Target Start/End: Complemental strand, 39960017 - 39959944
Alignment:
| Q |
125 |
acaacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaaata |
198 |
Q |
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| T |
39960017 |
acaacaggtcctgaagcaatcaaagcaccaactacagcacctccaacaacttgtccttgagcacccgctaaata |
39959944 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 45; Significance: 9e-17; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 127 - 195
Target Start/End: Complemental strand, 16579014 - 16578946
Alignment:
| Q |
127 |
aacaggtccagaagcaatcaaagcaccaacaacacttccaccaacaacctgcccttgtccgcccgctaa |
195 |
Q |
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| T |
16579014 |
aacaggtccagcagcaatcaaaggtccaacaacacttccaccaacaacttgcccttgtccaccggctaa |
16578946 |
T |
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