View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_3 (Length: 666)
Name: NF20165_low_3
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 277; Significance: 1e-154; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 277; E-Value: 1e-154
Query Start/End: Original strand, 17 - 321
Target Start/End: Original strand, 4365747 - 4366051
Alignment:
| Q |
17 |
atgaacatgatgcaattggtcccgtctaaaaatattgttccaagaatttatgaaaaatcacacactgaacatgttttatgcagtagttttcatgctttct |
116 |
Q |
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| T |
4365747 |
atgaacatgatgcaattggtcccgtctaaaaatattgttccaagaatttatgaaaaatcacacactgaacatgttttgtgcagtagttttcaggctttct |
4365846 |
T |
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| Q |
117 |
ctagttcatctaaataagtatctttctttctttttaagcatgtacaaagttcatatccggaaccaaacttcaagttcatctccgtaatgatttatttcag |
216 |
Q |
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| T |
4365847 |
ctagttcatctaaacaagtatctttctttctttttaagcatgtacaaagttcatatccggaaccaaacttcaagttcatatccgtaatgatttatttcag |
4365946 |
T |
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| Q |
217 |
ttataaactaactcatacccatcaaactcaattaaaaacaacatgcaaactaattatcattttgtatgcaataaaaatcagctcacaacaacaaacattc |
316 |
Q |
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| T |
4365947 |
ttataaactaactcatacccatcaaactcaattaaaaacaacatgcaaactaattatcattttgtatgcaacaaaaatcatctcataacaacaaacattc |
4366046 |
T |
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| Q |
317 |
aatca |
321 |
Q |
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| T |
4366047 |
aatca |
4366051 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 390 - 666
Target Start/End: Original strand, 4366050 - 4366326
Alignment:
| Q |
390 |
caccctatagatgttttagggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
489 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4366050 |
caccctatagatgttttaaggaagggattctatgttaccttaggctctcttaagaagagattgatgaaatttccaaattgactttgatctctacaattcc |
4366149 |
T |
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| Q |
490 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaaggggtttgaattttgattct |
589 |
Q |
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| T |
4366150 |
aagcttccattctcgtgacttctcttcatctctaattacttcttctccttctaagttgctgcccacatagggagaattaaggggtttgaattttgattct |
4366249 |
T |
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| Q |
590 |
tctcaattgatggacaaggagtgggtttggggttgattctctctccctcttcaccgaaaagaacacacttttaactt |
666 |
Q |
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| T |
4366250 |
tctctattgatggacaaggagagggtttggggttgattctctctcccttttcgcggaaaagaacatacttttaactt |
4366326 |
T |
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