View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20165_low_30 (Length: 227)
Name: NF20165_low_30
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_30 |
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| [»] chr2 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 38256544 - 38256318
Alignment:
| Q |
1 |
attcatcagatgcaagaaacaaagcagtctctgcaatatgagcagccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38256544 |
attcatcagatgcaagaaacaaagcagtctctgcaatatgagcagccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttc |
38256445 |
T |
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| Q |
101 |
actcggcaccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgcat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38256444 |
actcggcaccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgcat |
38256345 |
T |
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| Q |
201 |
gctgacctaacaaggcctataagacca |
227 |
Q |
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| T |
38256344 |
gctgacctaacaaggcctataagacca |
38256318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 7e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 45152725 - 45152499
Alignment:
| Q |
1 |
attcatcagatgcaagaaacaaagcagtctctgcaatatgagcagccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttc |
100 |
Q |
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||||||| || |||||||||| ||||| |||||||||||| ||||||| | ||||||||| | |||||||||| ||||| |||| |||||||||||| |
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| T |
45152725 |
attcatcggaagcaagaaacatagcagcttctgcaatatgaccagcctttagtgtaattcctttcaaattagcagaatcattcccaatagcttcaacttc |
45152626 |
T |
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| Q |
101 |
actcggcaccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcaccgcat |
200 |
Q |
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| T |
45152625 |
actcacatccttgttcagtgctctacataaaagaggtgtggcaacaccagaaggtgaaattgaattaactcttattccataagctccaagctcactgcac |
45152526 |
T |
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| Q |
201 |
gctgacctaacaaggcctataagacca |
227 |
Q |
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| T |
45152525 |
gttgagcgaacaaggcctataagacca |
45152499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 9 - 196
Target Start/End: Complemental strand, 45142072 - 45141885
Alignment:
| Q |
9 |
gatgcaagaaacaaagcagtctctgcaatatgagcagccttcaatgtaattccctgcaaattagcataatcaaggccaacagcttcaacttcactcggca |
108 |
Q |
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||||||||||| | ||||| ||||||||||| | |||||| | ||||||||| | |||||||||| |||| | ||||||||||| |||| | |
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| T |
45142072 |
gatgcaagaaagagagcagcttctgcaatatgcgtagcctttagtgtaattcctttcaaattagcagaatctttcatattagcttcaactttactcatct |
45141973 |
T |
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| Q |
109 |
ccatgtccagtgctctacatgcaagaggtgtagcaacagcatagggtgagattgaattgactctgattccataagctccaagctcacc |
196 |
Q |
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|||| | ||||||||||||||||||||| || |||||| |||| |||||||||||||||||||| ||||| ||||||||||||||||| |
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| T |
45141972 |
ccatattcagtgctctacatgcaagaggcgtggcaacaccatacggtgagattgaattgactctaattccgtaagctccaagctcacc |
45141885 |
T |
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