View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20165_low_4 (Length: 562)
Name: NF20165_low_4
Description: NF20165
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20165_low_4 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 508; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 17 - 549
Target Start/End: Complemental strand, 4590766 - 4590230
Alignment:
| Q |
17 |
agtttgtctatattgaaatttatatggagttttgggactaatttatcaataattagttcatgcatatttgtaattattgataaattacttcgtaaactat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4590766 |
agtttgtctatattgaaatttatatggagttttgggactaatttatcaataattagttcatgcatatttgtaattattgataaattacttcgtaaactat |
4590667 |
T |
|
| Q |
117 |
ttagtccctaataagttgacaacatgtgttggatcaacgtggggacatatctagttaacataacatgtcataatctttaatgatagaagctaacagaagg |
216 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4590666 |
ttagtccctaataagttgacaacatgtattggatcaacgtggggacatatctagttaacataacatgtcataatctttaatgatagaagctaacagaagg |
4590567 |
T |
|
| Q |
217 |
atcattttgaatagcattttacaatattgagaataaatctgtcaattcgcacgactgcttcgggggcattgattggagtgtgtggtatgagtaaaacaga |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4590566 |
atcattttgaatagcattttacaatattgagaataaatctgtcaattcgcacgactgcttcgggggcattgattggagtgtgtggtatgagtaaaacaga |
4590467 |
T |
|
| Q |
317 |
tgcagatgttgctaaacgtgcagccacacgactgtttgagttggatcctctgaatgcacatggtcatgtgaccctatgttcatg----ctcatctggaga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4590466 |
tgcagatgttgctaaacgtgcagccacacgactgcttgagttggatcctctgaatgcacatggtcatgtgaccctatgttcatgctttctcatctggaga |
4590367 |
T |
|
| Q |
413 |
tagattagatccacaagcagaagaaatgttgctacaaatttgaggaagacaatatccttagcacaacacttgtacataaagggacttttttgacacaaat |
512 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4590366 |
tagattagatccacaagcagaagaaatgttgctacaaatttgaggaagacaatatccttagcacaacacttgtacataaaggggcttttttgacacaaat |
4590267 |
T |
|
| Q |
513 |
atgtcactgctagatgataactgacaaggcaacatct |
549 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4590266 |
atgtcactgctagatgataactgacaaggcaacatct |
4590230 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 401 - 549
Target Start/End: Complemental strand, 4604259 - 4604108
Alignment:
| Q |
401 |
ctcatctggagatagattagatccacaagcagaagaaatgttgctacaaatttgaggaaga---caatatccttagcacaacacttgtacataaagggac |
497 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| |||||| ||||| |||||||||||||||||||| | |
|
|
| T |
4604259 |
ctcatctggagatagattagatccactagcagaagaaatgttgctacaaagttgaggaagaaaacaatatttttagcccaacacttgtacataaaggggc |
4604160 |
T |
|
| Q |
498 |
ttttttgacacaaatatgtcactgctagatgataactgacaaggcaacatct |
549 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
4604159 |
ttttttgacacaaatatatcactgttagatgataactgacgaggcaacatct |
4604108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 282 - 391
Target Start/End: Complemental strand, 4604498 - 4604389
Alignment:
| Q |
282 |
gcattgattggagtgtgtggtatgagtaaaacagatgcagatgttgctaaacgtgcagccacacgactgtttgagttggatcctctgaatgcacatggtc |
381 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||| |||| |
|
|
| T |
4604498 |
gcattgattggagtatgtggtttgagtaaaacagatgcagatattgctagacgtgcagccacacgattacttgagttggatcctctgaatgcaccaggtc |
4604399 |
T |
|
| Q |
382 |
atgtgaccct |
391 |
Q |
| |
|
|||||||||| |
|
|
| T |
4604398 |
atgtgaccct |
4604389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 50; Significance: 2e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 247
Target Start/End: Complemental strand, 41725820 - 41725616
Alignment:
| Q |
46 |
ttttgggactaatttatcaataattagttcatgcatatttgtaattattgataaattac------ttcgtaaactatttagtccctaataagttgacaac |
139 |
Q |
| |
|
||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||| ||| | | | |||||||||| ||||| || |
|
|
| T |
41725820 |
ttttgggactaatttgtcaataactagttcatgtatatttgtaattattgataaattacataaatttcattatcaatttagtccc-------ttgaccac |
41725728 |
T |
|
| Q |
140 |
atgtgttggatcaacgt----ggggacatatctagttaacataacatgtcataatctttaatgatagaagctaacagaaggatcattttgaatagcattt |
235 |
Q |
| |
|
|||||||||||||| || | ||||| | | |||||||| | |||||||| ||||||| ||| |||| |||| ||| ||||||||||||||| |||| |
|
|
| T |
41725727 |
atgtgttggatcaatgtccaaagagacatgtgtggttaacatgatatgtcatagtctttaacgattgaagttaaccgaatgatcattttgaatagaattt |
41725628 |
T |
|
| Q |
236 |
tacaatattgag |
247 |
Q |
| |
|
| |||||||||| |
|
|
| T |
41725627 |
ttcaatattgag |
41725616 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 51 - 80
Target Start/End: Original strand, 34138962 - 34138991
Alignment:
| Q |
51 |
ggactaatttatcaataattagttcatgca |
80 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
34138962 |
ggactaatttatcaataattagttcatgca |
34138991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University